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FRG2B (FSHD region gene 2 family member B)

Identity

Alias_namesFSHD region gene 2 family, member B
Other alias-
HGNC (Hugo) FRG2B
LocusID (NCBI) 441581
Atlas_Id 63588
Location 10q26.3  [Link to chromosome band 10q26]
Location_base_pair Starts at 133625099 and ends at 133626795 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FRG2B   33518
Cards
Entrez_Gene (NCBI)FRG2B  441581  FSHD region gene 2 family member B
Aliases
GeneCards (Weizmann)FRG2B
Ensembl hg19 (Hinxton)ENSG00000225899 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225899 [Gene_View]  chr10:133625099-133626795 [Contig_View]  FRG2B [Vega]
ICGC DataPortalENSG00000225899
TCGA cBioPortalFRG2B
AceView (NCBI)FRG2B
Genatlas (Paris)FRG2B
WikiGenes441581
SOURCE (Princeton)FRG2B
Genetics Home Reference (NIH)FRG2B
Genomic and cartography
GoldenPath hg38 (UCSC)FRG2B  -     chr10:133625099-133626795 -  10q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FRG2B  -     10q26.3   [Description]    (hg19-Feb_2009)
EnsemblFRG2B - 10q26.3 [CytoView hg19]  FRG2B - 10q26.3 [CytoView hg38]
Mapping of homologs : NCBIFRG2B [Mapview hg19]  FRG2B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY744466
RefSeq transcript (Entrez)NM_001080998
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FRG2B
Cluster EST : UnigeneHs.690471 [ NCBI ]
CGAP (NCI)Hs.690471
Alternative Splicing GalleryENSG00000225899
Gene ExpressionFRG2B [ NCBI-GEO ]   FRG2B [ EBI - ARRAY_EXPRESS ]   FRG2B [ SEEK ]   FRG2B [ MEM ]
Gene Expression Viewer (FireBrowse)FRG2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441581
GTEX Portal (Tissue expression)FRG2B
Human Protein AtlasENSG00000225899-FRG2B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96QU4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96QU4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96QU4
Splice isoforms : SwissVarQ96QU4
PhosPhoSitePlusQ96QU4
Domains : Interpro (EBI)FRG2   
Domain families : Pfam (Sanger)FRG2 (PF15315)   
Domain families : Pfam (NCBI)pfam15315   
Conserved Domain (NCBI)FRG2B
DMDM Disease mutations441581
Blocks (Seattle)FRG2B
SuperfamilyQ96QU4
Human Protein Atlas [tissue]ENSG00000225899-FRG2B [tissue]
Peptide AtlasQ96QU4
IPIIPI01009474   IPI00290038   
Protein Interaction databases
DIP (DOE-UCLA)Q96QU4
IntAct (EBI)Q96QU4
FunCoupENSG00000225899
BioGRIDFRG2B
STRING (EMBL)FRG2B
ZODIACFRG2B
Ontologies - Pathways
QuickGOQ96QU4
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkFRG2B
Atlas of Cancer Signalling NetworkFRG2B
Wikipedia pathwaysFRG2B
Orthology - Evolution
OrthoDB441581
GeneTree (enSembl)ENSG00000225899
Phylogenetic Trees/Animal Genes : TreeFamFRG2B
HOVERGENQ96QU4
HOGENOMQ96QU4
Homologs : HomoloGeneFRG2B
Homology/Alignments : Family Browser (UCSC)FRG2B
Gene fusions - Rearrangements
Tumor Fusion PortalFRG2B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFRG2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FRG2B
dbVarFRG2B
ClinVarFRG2B
1000_GenomesFRG2B 
Exome Variant ServerFRG2B
ExAC (Exome Aggregation Consortium)ENSG00000225899
GNOMAD BrowserENSG00000225899
Genetic variants : HAPMAP441581
Genomic Variants (DGV)FRG2B [DGVbeta]
DECIPHERFRG2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFRG2B 
Mutations
ICGC Data PortalFRG2B 
TCGA Data PortalFRG2B 
Broad Tumor PortalFRG2B
OASIS PortalFRG2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFRG2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFRG2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FRG2B
DgiDB (Drug Gene Interaction Database)FRG2B
DoCM (Curated mutations)FRG2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FRG2B (select a term)
intoGenFRG2B
Cancer3DFRG2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFRG2B
MedgenFRG2B
Genetic Testing Registry FRG2B
NextProtQ96QU4 [Medical]
TSGene441581
GENETestsFRG2B
Target ValidationFRG2B
Huge Navigator FRG2B [HugePedia]
snp3D : Map Gene to Disease441581
BioCentury BCIQFRG2B
ClinGenFRG2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441581
Chemical/Pharm GKB GenePA162388920
Clinical trialFRG2B
Miscellaneous
canSAR (ICR)FRG2B (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFRG2B
EVEXFRG2B
GoPubMedFRG2B
iHOPFRG2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:21:38 CET 2017

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