Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FRG2C (FSHD region gene 2 family member C)

Identity

Alias_namesFSHD region gene 2 family, member C
Other alias-
HGNC (Hugo) FRG2C
LocusID (NCBI) 100288801
Atlas_Id 63589
Location 3p12.3  [Link to chromosome band 3p12]
Location_base_pair Starts at 75664336 and ends at 75667217 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FRG2C   33626
Cards
Entrez_Gene (NCBI)FRG2C  100288801  FSHD region gene 2 family member C
Aliases
GeneCards (Weizmann)FRG2C
Ensembl hg19 (Hinxton)ENSG00000172969 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172969 [Gene_View]  chr3:75664336-75667217 [Contig_View]  FRG2C [Vega]
ICGC DataPortalENSG00000172969
TCGA cBioPortalFRG2C
AceView (NCBI)FRG2C
Genatlas (Paris)FRG2C
WikiGenes100288801
SOURCE (Princeton)FRG2C
Genetics Home Reference (NIH)FRG2C
Genomic and cartography
GoldenPath hg38 (UCSC)FRG2C  -     chr3:75664336-75667217 +  3p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FRG2C  -     3p12.3   [Description]    (hg19-Feb_2009)
EnsemblFRG2C - 3p12.3 [CytoView hg19]  FRG2C - 3p12.3 [CytoView hg38]
Mapping of homologs : NCBIFRG2C [Mapview hg19]  FRG2C [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001124759
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FRG2C
Cluster EST : UnigeneHs.274541 [ NCBI ]
CGAP (NCI)Hs.274541
Alternative Splicing GalleryENSG00000172969
Gene ExpressionFRG2C [ NCBI-GEO ]   FRG2C [ EBI - ARRAY_EXPRESS ]   FRG2C [ SEEK ]   FRG2C [ MEM ]
Gene Expression Viewer (FireBrowse)FRG2C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100288801
GTEX Portal (Tissue expression)FRG2C
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NGY1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NGY1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NGY1
Splice isoforms : SwissVarA6NGY1
PhosPhoSitePlusA6NGY1
Domains : Interpro (EBI)FRG2   
Domain families : Pfam (Sanger)FRG2 (PF15315)   
Domain families : Pfam (NCBI)pfam15315   
Conserved Domain (NCBI)FRG2C
DMDM Disease mutations100288801
Blocks (Seattle)FRG2C
SuperfamilyA6NGY1
Human Protein AtlasENSG00000172969
Peptide AtlasA6NGY1
IPIIPI00175122   
Protein Interaction databases
DIP (DOE-UCLA)A6NGY1
IntAct (EBI)A6NGY1
FunCoupENSG00000172969
BioGRIDFRG2C
STRING (EMBL)FRG2C
ZODIACFRG2C
Ontologies - Pathways
QuickGOA6NGY1
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkFRG2C
Atlas of Cancer Signalling NetworkFRG2C
Wikipedia pathwaysFRG2C
Orthology - Evolution
OrthoDB100288801
GeneTree (enSembl)ENSG00000172969
Phylogenetic Trees/Animal Genes : TreeFamFRG2C
HOVERGENA6NGY1
HOGENOMA6NGY1
Homologs : HomoloGeneFRG2C
Homology/Alignments : Family Browser (UCSC)FRG2C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFRG2C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FRG2C
dbVarFRG2C
ClinVarFRG2C
1000_GenomesFRG2C 
Exome Variant ServerFRG2C
ExAC (Exome Aggregation Consortium)FRG2C (select the gene name)
Genetic variants : HAPMAP100288801
Genomic Variants (DGV)FRG2C [DGVbeta]
DECIPHERFRG2C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFRG2C 
Mutations
ICGC Data PortalFRG2C 
TCGA Data PortalFRG2C 
Broad Tumor PortalFRG2C
OASIS PortalFRG2C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFRG2C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFRG2C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FRG2C
DgiDB (Drug Gene Interaction Database)FRG2C
DoCM (Curated mutations)FRG2C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FRG2C (select a term)
intoGenFRG2C
Cancer3DFRG2C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFRG2C
Genetic Testing Registry FRG2C
NextProtA6NGY1 [Medical]
TSGene100288801
GENETestsFRG2C
Huge Navigator FRG2C [HugePedia]
snp3D : Map Gene to Disease100288801
BioCentury BCIQFRG2C
ClinGenFRG2C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100288801
Chemical/Pharm GKB GenePA162388921
Clinical trialFRG2C
Miscellaneous
canSAR (ICR)FRG2C (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFRG2C
EVEXFRG2C
GoPubMedFRG2C
iHOPFRG2C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:12:52 CEST 2017

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