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FRMD1 (FERM domain containing 1)

Identity

Alias_symbol (synonym)FLJ00181
DKFZp434O0117
FLJ40260
FLJ22615
bA164L23.1
Other alias
HGNC (Hugo) FRMD1
LocusID (NCBI) 79981
Atlas_Id 63592
Location 6q27  [Link to chromosome band 6q27]
Location_base_pair Starts at 168055784 and ends at 168075866 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FRMD1   21240
Cards
Entrez_Gene (NCBI)FRMD1  79981  FERM domain containing 1
AliasesbA164L23.1
GeneCards (Weizmann)FRMD1
Ensembl hg19 (Hinxton)ENSG00000153303 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153303 [Gene_View]  ENSG00000153303 [Sequence]  chr6:168055784-168075866 [Contig_View]  FRMD1 [Vega]
ICGC DataPortalENSG00000153303
TCGA cBioPortalFRMD1
AceView (NCBI)FRMD1
Genatlas (Paris)FRMD1
WikiGenes79981
SOURCE (Princeton)FRMD1
Genetics Home Reference (NIH)FRMD1
Genomic and cartography
GoldenPath hg38 (UCSC)FRMD1  -     chr6:168055784-168075866 -  6q27   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FRMD1  -     6q27   [Description]    (hg19-Feb_2009)
EnsemblFRMD1 - 6q27 [CytoView hg19]  FRMD1 - 6q27 [CytoView hg38]
Mapping of homologs : NCBIFRMD1 [Mapview hg19]  FRMD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026268 AK074110 AK097179 AK097579 AK125963
RefSeq transcript (Entrez)NM_001122841 NM_024919
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FRMD1
Cluster EST : UnigeneHs.739361 [ NCBI ]
CGAP (NCI)Hs.739361
Alternative Splicing GalleryENSG00000153303
Gene ExpressionFRMD1 [ NCBI-GEO ]   FRMD1 [ EBI - ARRAY_EXPRESS ]   FRMD1 [ SEEK ]   FRMD1 [ MEM ]
Gene Expression Viewer (FireBrowse)FRMD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79981
GTEX Portal (Tissue expression)FRMD1
Human Protein AtlasENSG00000153303-FRMD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N878   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N878  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N878
Splice isoforms : SwissVarQ8N878
PhosPhoSitePlusQ8N878
Domaine pattern : Prosite (Expaxy)FERM_3 (PS50057)   
Domains : Interpro (EBI)Band_41_domain    FERM/acyl-CoA-bd_prot_3-hlx    FERM_central    FERM_domain    FERM_N    FERM_PH-like_C    PH_dom-like    Ubiquitin-rel_dom   
Domain families : Pfam (Sanger)FERM_M (PF00373)    FERM_N (PF09379)   
Domain families : Pfam (NCBI)pfam00373    pfam09379   
Domain families : Smart (EMBL)B41 (SM00295)  FERM_C (SM01196)  
Conserved Domain (NCBI)FRMD1
DMDM Disease mutations79981
Blocks (Seattle)FRMD1
SuperfamilyQ8N878
Human Protein Atlas [tissue]ENSG00000153303-FRMD1 [tissue]
Peptide AtlasQ8N878
HPRD10997
IPIIPI00783782   IPI00167380   IPI01008986   IPI00302421   IPI00965027   IPI00966853   
Protein Interaction databases
DIP (DOE-UCLA)Q8N878
IntAct (EBI)Q8N878
FunCoupENSG00000153303
BioGRIDFRMD1
STRING (EMBL)FRMD1
ZODIACFRMD1
Ontologies - Pathways
QuickGOQ8N878
Ontology : AmiGOcytoskeleton  
Ontology : EGO-EBIcytoskeleton  
NDEx NetworkFRMD1
Atlas of Cancer Signalling NetworkFRMD1
Wikipedia pathwaysFRMD1
Orthology - Evolution
OrthoDB79981
GeneTree (enSembl)ENSG00000153303
Phylogenetic Trees/Animal Genes : TreeFamFRMD1
HOVERGENQ8N878
HOGENOMQ8N878
Homologs : HomoloGeneFRMD1
Homology/Alignments : Family Browser (UCSC)FRMD1
Gene fusions - Rearrangements
Fusion : QuiverFRMD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFRMD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FRMD1
dbVarFRMD1
ClinVarFRMD1
1000_GenomesFRMD1 
Exome Variant ServerFRMD1
ExAC (Exome Aggregation Consortium)ENSG00000153303
GNOMAD BrowserENSG00000153303
Varsome BrowserFRMD1
Genetic variants : HAPMAP79981
Genomic Variants (DGV)FRMD1 [DGVbeta]
DECIPHERFRMD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFRMD1 
Mutations
ICGC Data PortalFRMD1 
TCGA Data PortalFRMD1 
Broad Tumor PortalFRMD1
OASIS PortalFRMD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFRMD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFRMD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FRMD1
DgiDB (Drug Gene Interaction Database)FRMD1
DoCM (Curated mutations)FRMD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FRMD1 (select a term)
intoGenFRMD1
Cancer3DFRMD1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFRMD1
MedgenFRMD1
Genetic Testing Registry FRMD1
NextProtQ8N878 [Medical]
TSGene79981
GENETestsFRMD1
Target ValidationFRMD1
Huge Navigator FRMD1 [HugePedia]
snp3D : Map Gene to Disease79981
BioCentury BCIQFRMD1
ClinGenFRMD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79981
Chemical/Pharm GKB GenePA134993010
Clinical trialFRMD1
Miscellaneous
canSAR (ICR)FRMD1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFRMD1
EVEXFRMD1
GoPubMedFRMD1
iHOPFRMD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:46:39 CEST 2018

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