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FRMD1 (FERM domain containing 1)

Identity

Alias (NCBI)bA164L23.1
HGNC (Hugo) FRMD1
HGNC Alias symbFLJ00181
DKFZp434O0117
FLJ40260
FLJ22615
bA164L23.1
LocusID (NCBI) 79981
Atlas_Id 63592
Location 6q27  [Link to chromosome band 6q27]
Location_base_pair Starts at 168053096 and ends at 168079212 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)FRMD1   21240
Cards
Entrez_Gene (NCBI)FRMD1    FERM domain containing 1
AliasesbA164L23.1
GeneCards (Weizmann)FRMD1
Ensembl hg19 (Hinxton)ENSG00000153303 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153303 [Gene_View]  ENSG00000153303 [Sequence]  chr6:168053096-168079212 [Contig_View]  FRMD1 [Vega]
ICGC DataPortalENSG00000153303
TCGA cBioPortalFRMD1
AceView (NCBI)FRMD1
Genatlas (Paris)FRMD1
SOURCE (Princeton)FRMD1
Genetics Home Reference (NIH)FRMD1
Genomic and cartography
GoldenPath hg38 (UCSC)FRMD1  -     chr6:168053096-168079212 -  6q27   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FRMD1  -     6q27   [Description]    (hg19-Feb_2009)
GoldenPathFRMD1 - 6q27 [CytoView hg19]  FRMD1 - 6q27 [CytoView hg38]
ImmunoBaseENSG00000153303
Genome Data Viewer NCBIFRMD1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK026268 AK074110 AK097179 AK097579 AK125963
RefSeq transcript (Entrez)NM_001122841 NM_001394681 NM_024919
Consensus coding sequences : CCDS (NCBI)FRMD1
Gene ExpressionFRMD1 [ NCBI-GEO ]   FRMD1 [ EBI - ARRAY_EXPRESS ]   FRMD1 [ SEEK ]   FRMD1 [ MEM ]
Gene Expression Viewer (FireBrowse)FRMD1 [ Firebrowse - Broad ]
GenevisibleExpression of FRMD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79981
GTEX Portal (Tissue expression)FRMD1
Human Protein AtlasENSG00000153303-FRMD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N878   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N878  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N878
PhosPhoSitePlusQ8N878
Domaine pattern : Prosite (Expaxy)FERM_3 (PS50057)   
Domains : Interpro (EBI)Band_41_domain    FERM/acyl-CoA-bd_prot_sf    FERM_2    FERM_central    FERM_domain    FERM_N    FERM_PH-like_C    Ubiquitin-like_domsf   
Domain families : Pfam (Sanger)FERM_M (PF00373)    FERM_N (PF09379)   
Domain families : Pfam (NCBI)pfam00373    pfam09379   
Domain families : Smart (EMBL)B41 (SM00295)  FERM_C (SM01196)  
Conserved Domain (NCBI)FRMD1
SuperfamilyQ8N878
AlphaFold pdb e-kbQ8N878   
Human Protein Atlas [tissue]ENSG00000153303-FRMD1 [tissue]
HPRD10997
Protein Interaction databases
DIP (DOE-UCLA)Q8N878
IntAct (EBI)Q8N878
BioGRIDFRMD1
STRING (EMBL)FRMD1
ZODIACFRMD1
Ontologies - Pathways
QuickGOQ8N878
Ontology : AmiGOprotein binding  cytoskeleton  positive regulation of hippo signaling  cytoplasmic side of apical plasma membrane  DNA-binding transcription factor binding  
Ontology : EGO-EBIprotein binding  cytoskeleton  positive regulation of hippo signaling  cytoplasmic side of apical plasma membrane  DNA-binding transcription factor binding  
NDEx NetworkFRMD1
Atlas of Cancer Signalling NetworkFRMD1
Wikipedia pathwaysFRMD1
Orthology - Evolution
OrthoDB79981
GeneTree (enSembl)ENSG00000153303
Phylogenetic Trees/Animal Genes : TreeFamFRMD1
Homologs : HomoloGeneFRMD1
Homology/Alignments : Family Browser (UCSC)FRMD1
Gene fusions - Rearrangements
Fusion : QuiverFRMD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFRMD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FRMD1
dbVarFRMD1
ClinVarFRMD1
MonarchFRMD1
1000_GenomesFRMD1 
Exome Variant ServerFRMD1
GNOMAD BrowserENSG00000153303
Varsome BrowserFRMD1
ACMGFRMD1 variants
VarityQ8N878
Genomic Variants (DGV)FRMD1 [DGVbeta]
DECIPHERFRMD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFRMD1 
Mutations
ICGC Data PortalFRMD1 
TCGA Data PortalFRMD1 
Broad Tumor PortalFRMD1
OASIS PortalFRMD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFRMD1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFRMD1
Mutations and Diseases : HGMDFRMD1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaFRMD1
DgiDB (Drug Gene Interaction Database)FRMD1
DoCM (Curated mutations)FRMD1
CIViC (Clinical Interpretations of Variants in Cancer)FRMD1
Cancer3DFRMD1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFRMD1
MedgenFRMD1
Genetic Testing Registry FRMD1
NextProtQ8N878 [Medical]
GENETestsFRMD1
Target ValidationFRMD1
Huge Navigator FRMD1 [HugePedia]
ClinGenFRMD1
Clinical trials, drugs, therapy
MyCancerGenomeFRMD1
Protein Interactions : CTDFRMD1
Pharm GKB GenePA134993010
PharosQ8N878
Clinical trialFRMD1
Miscellaneous
canSAR (ICR)FRMD1
HarmonizomeFRMD1
DataMed IndexFRMD1
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFRMD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:50:54 CEST 2021

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