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FRMD3 (FERM domain containing 3)

Identity

Other names4.1O
EPB41L4O
EPB41LO
P410
HGNC (Hugo) FRMD3
LocusID (NCBI) 257019
Location 9q21.32
Location_base_pair Starts at 85857905 and ends at 86153348 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FRMD3   24125
Cards
Entrez_Gene (NCBI)FRMD3  257019  FERM domain containing 3
GeneCards (Weizmann)FRMD3
Ensembl (Hinxton)ENSG00000172159 [Gene_View]  chr9:85857905-86153348 [Contig_View]  FRMD3 [Vega]
ICGC DataPortalENSG00000172159
cBioPortalFRMD3
AceView (NCBI)FRMD3
Genatlas (Paris)FRMD3
WikiGenes257019
SOURCE (Princeton)NM_001244959 NM_001244960 NM_001244961 NM_001244962 NM_174938
Genomic and cartography
GoldenPath (UCSC)FRMD3  -  9q21.32   chr9:85857905-86153348 -  9q21.32   [Description]    (hg19-Feb_2009)
EnsemblFRMD3 - 9q21.32 [CytoView]
Mapping of homologs : NCBIFRMD3 [Mapview]
OMIM607619   
Gene and transcription
Genbank (Entrez)AK094281 AK223597 AK297722 AY137774 BC023560
RefSeq transcript (Entrez)NM_001244959 NM_001244960 NM_001244961 NM_001244962 NM_174938
RefSeq genomic (Entrez)AC_000141 NC_000009 NC_018920 NT_008470 NW_001839221 NW_004929366
Consensus coding sequences : CCDS (NCBI)FRMD3
Cluster EST : UnigeneHs.743606 [ NCBI ]
CGAP (NCI)Hs.743606
Alternative Splicing : Fast-db (Paris)GSHG0030908
Alternative Splicing GalleryENSG00000172159
Gene ExpressionFRMD3 [ NCBI-GEO ]     FRMD3 [ SEEK ]   FRMD3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA2A2Y4 (Uniprot)
NextProtA2A2Y4  [Medical]
With graphics : InterProA2A2Y4
Splice isoforms : SwissVarA2A2Y4 (Swissvar)
Domaine pattern : Prosite (Expaxy)FERM_1 (PS00660)    FERM_3 (PS50057)   
Domains : Interpro (EBI)Band_41_domain [organisation]   Band_41_fam [organisation]   Ez/rad/moesin_like [organisation]   FERM-adjacent [organisation]   FERM/acyl-CoA-bd_prot_3-hlx [organisation]   FERM_central [organisation]   FERM_CS [organisation]   FERM_domain [organisation]   FERM_N [organisation]   FERM_PH-like_C [organisation]   PH_like_dom [organisation]   Ubiquitin-rel_dom [organisation]  
Related proteins : CluSTrA2A2Y4
Domain families : Pfam (Sanger)FA (PF08736)    FERM_C (PF09380)    FERM_M (PF00373)    FERM_N (PF09379)   
Domain families : Pfam (NCBI)pfam08736    pfam09380    pfam00373    pfam09379   
Domain families : Smart (EMBL)B41 (SM00295)  
DMDM Disease mutations257019
Blocks (Seattle)A2A2Y4
Human Protein AtlasENSG00000172159 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasA2A2Y4
HPRD07402
IPIIPI00657701   IPI00217088   IPI00642471   IPI00184358   IPI00885145   IPI00552951   
Protein Interaction databases
DIP (DOE-UCLA)A2A2Y4
IntAct (EBI)A2A2Y4
FunCoupENSG00000172159
BioGRIDFRMD3
InParanoidA2A2Y4
Interologous Interaction database A2A2Y4
IntegromeDBFRMD3
STRING (EMBL)FRMD3
Ontologies - Pathways
Ontology : AmiGOcytoplasm  cytoskeleton  cytoskeletal protein binding  integral component of membrane  extrinsic component of membrane  
Ontology : EGO-EBIcytoplasm  cytoskeleton  cytoskeletal protein binding  integral component of membrane  extrinsic component of membrane  
Protein Interaction DatabaseFRMD3
Wikipedia pathwaysFRMD3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)FRMD3
snp3D : Map Gene to Disease257019
SNP (GeneSNP Utah)FRMD3
SNP : HGBaseFRMD3
Genetic variants : HAPMAPFRMD3
Exome VariantFRMD3
1000_GenomesFRMD3 
ICGC programENSG00000172159 
Somatic Mutations in Cancer : COSMICFRMD3 
CONAN: Copy Number AnalysisFRMD3 
Mutations and Diseases : HGMDFRMD3
Genomic VariantsFRMD3  FRMD3 [DGVbeta]
dbVarFRMD3
ClinVarFRMD3
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM607619   
MedgenFRMD3
GENETestsFRMD3
Disease Genetic AssociationFRMD3
Huge Navigator FRMD3 [HugePedia]  FRMD3 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneFRMD3
Homology/Alignments : Family Browser (UCSC)FRMD3
Phylogenetic Trees/Animal Genes : TreeFamFRMD3
Chemical/Protein Interactions : CTD257019
Chemical/Pharm GKB GenePA134903920
Clinical trialFRMD3
Cancer Resource (Charite)ENSG00000172159
Other databases
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
CoreMineFRMD3
iHOPFRMD3
OncoSearchFRMD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 13:55:18 CEST 2014

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