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FRMD3 (FERM domain containing 3)

Identity

Other names4.1O
EPB41L4O
EPB41LO
P410
HGNC (Hugo) FRMD3
LocusID (NCBI) 257019
Atlas_Id 47685
Location 9q21.32
Location_base_pair Starts at 85857905 and ends at 86153348 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FRMD3 (9q21.32) / MYH11 (16p13.11)HSDL2 (9q32) / FRMD3 (9q21.32)HSDL2 9q32 / FRMD3 9q21.32

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FRMD3   24125
Cards
Entrez_Gene (NCBI)FRMD3  257019  FERM domain containing 3
GeneCards (Weizmann)FRMD3
Ensembl hg19 (Hinxton)ENSG00000172159 [Gene_View]  chr9:85857905-86153348 [Contig_View]  FRMD3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000172159 [Gene_View]  chr9:85857905-86153348 [Contig_View]  FRMD3 [Vega]
ICGC DataPortalENSG00000172159
TCGA cBioPortalFRMD3
AceView (NCBI)FRMD3
Genatlas (Paris)FRMD3
WikiGenes257019
SOURCE (Princeton)FRMD3
Genomic and cartography
GoldenPath hg19 (UCSC)FRMD3  -     chr9:85857905-86153348 -  9q21.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FRMD3  -     9q21.32   [Description]    (hg38-Dec_2013)
EnsemblFRMD3 - 9q21.32 [CytoView hg19]  FRMD3 - 9q21.32 [CytoView hg38]
Mapping of homologs : NCBIFRMD3 [Mapview hg19]  FRMD3 [Mapview hg38]
OMIM607619   
Gene and transcription
Genbank (Entrez)AK094281 AK223597 AK297722 AY137774 BC023560
RefSeq transcript (Entrez)NM_001244959 NM_001244960 NM_001244961 NM_001244962 NM_174938
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)FRMD3
Cluster EST : UnigeneHs.743606 [ NCBI ]
CGAP (NCI)Hs.743606
Alternative Splicing : Fast-db (Paris)GSHG0030908
Alternative Splicing GalleryENSG00000172159
Gene ExpressionFRMD3 [ NCBI-GEO ]   FRMD3 [ EBI - ARRAY_EXPRESS ]   FRMD3 [ SEEK ]   FRMD3 [ MEM ]
Gene Expression Viewer (FireBrowse)FRMD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)257019
Protein : pattern, domain, 3D structure
UniProt/SwissProtA2A2Y4 (Uniprot)
NextProtA2A2Y4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA2A2Y4
Splice isoforms : SwissVarA2A2Y4 (Swissvar)
PhosPhoSitePlusA2A2Y4
Domaine pattern : Prosite (Expaxy)FERM_1 (PS00660)    FERM_3 (PS50057)   
Domains : Interpro (EBI)Band_41_domain    Ez/rad/moesin-like    FERM-adjacent    FERM/acyl-CoA-bd_prot_3-hlx    FERM_central    FERM_CS    FERM_domain    FERM_N    FERM_PH-like_C    PH_dom-like    Ubiquitin-rel_dom   
Domain families : Pfam (Sanger)FA (PF08736)    FERM_C (PF09380)    FERM_M (PF00373)    FERM_N (PF09379)   
Domain families : Pfam (NCBI)pfam08736    pfam09380    pfam00373    pfam09379   
Domain families : Smart (EMBL)B41 (SM00295)  
DMDM Disease mutations257019
Blocks (Seattle)FRMD3
SuperfamilyA2A2Y4
Human Protein AtlasENSG00000172159
Peptide AtlasA2A2Y4
HPRD07402
IPIIPI00657701   IPI00217088   IPI00642471   IPI00184358   IPI00885145   IPI00552951   
Protein Interaction databases
DIP (DOE-UCLA)A2A2Y4
IntAct (EBI)A2A2Y4
FunCoupENSG00000172159
BioGRIDFRMD3
STRING (EMBL)FRMD3
ZODIACFRMD3
Ontologies - Pathways
QuickGOA2A2Y4
Ontology : AmiGOcytoplasm  cytoskeleton  cytoskeletal protein binding  integral component of membrane  extrinsic component of membrane  
Ontology : EGO-EBIcytoplasm  cytoskeleton  cytoskeletal protein binding  integral component of membrane  extrinsic component of membrane  
NDEx Network
Atlas of Cancer Signalling NetworkFRMD3
Wikipedia pathwaysFRMD3
Orthology - Evolution
OrthoDB257019
GeneTree (enSembl)ENSG00000172159
Phylogenetic Trees/Animal Genes : TreeFamFRMD3
Homologs : HomoloGeneFRMD3
Homology/Alignments : Family Browser (UCSC)FRMD3
Gene fusions - Rearrangements
Fusion: TCGAHSDL2 9q32 FRMD3 9q21.32 BRCA
Polymorphisms : SNP, variants
NCBI Variation ViewerFRMD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FRMD3
dbVarFRMD3
ClinVarFRMD3
1000_GenomesFRMD3 
Exome Variant ServerFRMD3
ExAC (Exome Aggregation Consortium)FRMD3 (select the gene name)
SNP (GeneSNP Utah)FRMD3
SNP : HGBaseFRMD3
Genetic variants : HAPMAPFRMD3
Genomic Variants (DGV)FRMD3 [DGVbeta]
Mutations
ICGC Data PortalFRMD3 
TCGA Data PortalFRMD3 
Broad Tumor PortalFRMD3
OASIS PortalFRMD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFRMD3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FRMD3
DgiDB (Drug Gene Interaction Database)FRMD3
DoCM (Curated mutations)FRMD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FRMD3 (select a term)
intoGenFRMD3
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)9:85857905-86153348
CONAN: Copy Number AnalysisFRMD3 
Mutations and Diseases : HGMDFRMD3
OMIM607619   
MedgenFRMD3
Genetic Testing Registry FRMD3
NextProtA2A2Y4 [Medical]
TSGene257019
GENETestsFRMD3
Huge Navigator FRMD3 [HugePedia]  FRMD3 [HugeCancerGEM]
snp3D : Map Gene to Disease257019
BioCentury BCIQFRMD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD257019
Chemical/Pharm GKB GenePA134903920
Clinical trialFRMD3
Miscellaneous
canSAR (ICR)FRMD3 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFRMD3
GoPubMedFRMD3
iHOPFRMD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Apr 16 17:45:24 CEST 2016

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