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FRMD6-AS1 (FRMD6 antisense RNA 1)

Identity

Alias_namesC14orf82
chromosome 14 open reading frame 82
FRMD6 antisense RNA 1 (non-protein coding)
Other alias
HGNC (Hugo) FRMD6-AS1
LocusID (NCBI) 145438
Atlas_Id 63594
Location 14q22.1  [Link to chromosome band 14q22]
Location_base_pair Starts at 51649516 and ends at 51651744 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FRMD6-AS1   20129
Cards
Entrez_Gene (NCBI)FRMD6-AS1  145438  FRMD6 antisense RNA 1
AliasesC14orf82
GeneCards (Weizmann)FRMD6-AS1
Ensembl hg19 (Hinxton)ENSG00000273888 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000273888 [Gene_View]  chr14:51649516-51651744 [Contig_View]  FRMD6-AS1 [Vega]
ICGC DataPortalENSG00000273888
TCGA cBioPortalFRMD6-AS1
AceView (NCBI)FRMD6-AS1
Genatlas (Paris)FRMD6-AS1
WikiGenes145438
SOURCE (Princeton)FRMD6-AS1
Genetics Home Reference (NIH)FRMD6-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)FRMD6-AS1  -     chr14:51649516-51651744 -  14q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FRMD6-AS1  -     14q22.1   [Description]    (hg19-Feb_2009)
EnsemblFRMD6-AS1 - 14q22.1 [CytoView hg19]  FRMD6-AS1 - 14q22.1 [CytoView hg38]
Mapping of homologs : NCBIFRMD6-AS1 [Mapview hg19]  FRMD6-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022437 BX104826 W44516
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FRMD6-AS1
Cluster EST : UnigeneHs.645410 [ NCBI ]
CGAP (NCI)Hs.645410
Alternative Splicing GalleryENSG00000273888
Gene ExpressionFRMD6-AS1 [ NCBI-GEO ]   FRMD6-AS1 [ EBI - ARRAY_EXPRESS ]   FRMD6-AS1 [ SEEK ]   FRMD6-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)FRMD6-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)145438
GTEX Portal (Tissue expression)FRMD6-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7T7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7T7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7T7
Splice isoforms : SwissVarP0C7T7
PhosPhoSitePlusP0C7T7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FRMD6-AS1
DMDM Disease mutations145438
Blocks (Seattle)FRMD6-AS1
SuperfamilyP0C7T7
Human Protein AtlasENSG00000273888
Peptide AtlasP0C7T7
IPIIPI00900387   IPI00979066   
Protein Interaction databases
DIP (DOE-UCLA)P0C7T7
IntAct (EBI)P0C7T7
FunCoupENSG00000273888
BioGRIDFRMD6-AS1
STRING (EMBL)FRMD6-AS1
ZODIACFRMD6-AS1
Ontologies - Pathways
QuickGOP0C7T7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFRMD6-AS1
Atlas of Cancer Signalling NetworkFRMD6-AS1
Wikipedia pathwaysFRMD6-AS1
Orthology - Evolution
OrthoDB145438
GeneTree (enSembl)ENSG00000273888
Phylogenetic Trees/Animal Genes : TreeFamFRMD6-AS1
HOVERGENP0C7T7
HOGENOMP0C7T7
Homologs : HomoloGeneFRMD6-AS1
Homology/Alignments : Family Browser (UCSC)FRMD6-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFRMD6-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FRMD6-AS1
dbVarFRMD6-AS1
ClinVarFRMD6-AS1
1000_GenomesFRMD6-AS1 
Exome Variant ServerFRMD6-AS1
ExAC (Exome Aggregation Consortium)FRMD6-AS1 (select the gene name)
Genetic variants : HAPMAP145438
Genomic Variants (DGV)FRMD6-AS1 [DGVbeta]
DECIPHERFRMD6-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFRMD6-AS1 
Mutations
ICGC Data PortalFRMD6-AS1 
TCGA Data PortalFRMD6-AS1 
Broad Tumor PortalFRMD6-AS1
OASIS PortalFRMD6-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFRMD6-AS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FRMD6-AS1
DgiDB (Drug Gene Interaction Database)FRMD6-AS1
DoCM (Curated mutations)FRMD6-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FRMD6-AS1 (select a term)
intoGenFRMD6-AS1
Cancer3DFRMD6-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFRMD6-AS1
Genetic Testing Registry FRMD6-AS1
NextProtP0C7T7 [Medical]
TSGene145438
GENETestsFRMD6-AS1
Target ValidationFRMD6-AS1
Huge Navigator FRMD6-AS1 [HugePedia]
snp3D : Map Gene to Disease145438
BioCentury BCIQFRMD6-AS1
ClinGenFRMD6-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD145438
Chemical/Pharm GKB GenePA134877599
Clinical trialFRMD6-AS1
Miscellaneous
canSAR (ICR)FRMD6-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFRMD6-AS1
EVEXFRMD6-AS1
GoPubMedFRMD6-AS1
iHOPFRMD6-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:49:55 CEST 2017

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