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FRMD8 (FERM domain containing 8)

Identity

Alias_symbol (synonym)FLJ90369
FKSG44
Other alias
HGNC (Hugo) FRMD8
LocusID (NCBI) 83786
Atlas_Id 63596
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 65386570 and ends at 65413524 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FRMD8 (11q13.1) / DPF2 (11q13.1)FRMD8 (11q13.1) / MAST1 (19p13.2)PLCG1 (20q12) / FRMD8 (11q13.1)
SCYL1 (11q13.1) / FRMD8 (11q13.1)FRMD8 MAST1FRMD8 DPF2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FRMD8   25462
Cards
Entrez_Gene (NCBI)FRMD8  83786  FERM domain containing 8
AliasesFKSG44
GeneCards (Weizmann)FRMD8
Ensembl hg19 (Hinxton)ENSG00000126391 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000126391 [Gene_View]  chr11:65386570-65413524 [Contig_View]  FRMD8 [Vega]
ICGC DataPortalENSG00000126391
TCGA cBioPortalFRMD8
AceView (NCBI)FRMD8
Genatlas (Paris)FRMD8
WikiGenes83786
SOURCE (Princeton)FRMD8
Genetics Home Reference (NIH)FRMD8
Genomic and cartography
GoldenPath hg38 (UCSC)FRMD8  -     chr11:65386570-65413524 +  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FRMD8  -     11q13.1   [Description]    (hg19-Feb_2009)
EnsemblFRMD8 - 11q13.1 [CytoView hg19]  FRMD8 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBIFRMD8 [Mapview hg19]  FRMD8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF334946 AK056778 AK074850 AK291678 AK304363
RefSeq transcript (Entrez)NM_001300832 NM_001300833 NM_031904
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FRMD8
Cluster EST : UnigeneHs.578433 [ NCBI ]
CGAP (NCI)Hs.578433
Alternative Splicing GalleryENSG00000126391
Gene ExpressionFRMD8 [ NCBI-GEO ]   FRMD8 [ EBI - ARRAY_EXPRESS ]   FRMD8 [ SEEK ]   FRMD8 [ MEM ]
Gene Expression Viewer (FireBrowse)FRMD8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83786
GTEX Portal (Tissue expression)FRMD8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZ67   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZ67  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZ67
Splice isoforms : SwissVarQ9BZ67
PhosPhoSitePlusQ9BZ67
Domaine pattern : Prosite (Expaxy)FERM_3 (PS50057)   
Domains : Interpro (EBI)Band_41_domain    FERM/acyl-CoA-bd_prot_3-hlx    FERM_central    FERM_domain   
Domain families : Pfam (Sanger)FERM_M (PF00373)   
Domain families : Pfam (NCBI)pfam00373   
Domain families : Smart (EMBL)B41 (SM00295)  
Conserved Domain (NCBI)FRMD8
DMDM Disease mutations83786
Blocks (Seattle)FRMD8
SuperfamilyQ9BZ67
Human Protein AtlasENSG00000126391
Peptide AtlasQ9BZ67
HPRD13326
IPIIPI00011090   IPI00168371   IPI00166727   IPI00910386   IPI00983114   IPI00977201   IPI00980255   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZ67
IntAct (EBI)Q9BZ67
FunCoupENSG00000126391
BioGRIDFRMD8
STRING (EMBL)FRMD8
ZODIACFRMD8
Ontologies - Pathways
QuickGOQ9BZ67
Ontology : AmiGOprotein binding  cytoskeleton  
Ontology : EGO-EBIprotein binding  cytoskeleton  
NDEx NetworkFRMD8
Atlas of Cancer Signalling NetworkFRMD8
Wikipedia pathwaysFRMD8
Orthology - Evolution
OrthoDB83786
GeneTree (enSembl)ENSG00000126391
Phylogenetic Trees/Animal Genes : TreeFamFRMD8
HOVERGENQ9BZ67
HOGENOMQ9BZ67
Homologs : HomoloGeneFRMD8
Homology/Alignments : Family Browser (UCSC)FRMD8
Gene fusions - Rearrangements
Fusion: TCGAFRMD8 MAST1
Fusion: TCGAFRMD8 DPF2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFRMD8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FRMD8
dbVarFRMD8
ClinVarFRMD8
1000_GenomesFRMD8 
Exome Variant ServerFRMD8
ExAC (Exome Aggregation Consortium)FRMD8 (select the gene name)
Genetic variants : HAPMAP83786
Genomic Variants (DGV)FRMD8 [DGVbeta]
DECIPHERFRMD8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFRMD8 
Mutations
ICGC Data PortalFRMD8 
TCGA Data PortalFRMD8 
Broad Tumor PortalFRMD8
OASIS PortalFRMD8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFRMD8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFRMD8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FRMD8
DgiDB (Drug Gene Interaction Database)FRMD8
DoCM (Curated mutations)FRMD8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FRMD8 (select a term)
intoGenFRMD8
Cancer3DFRMD8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFRMD8
Genetic Testing Registry FRMD8
NextProtQ9BZ67 [Medical]
TSGene83786
GENETestsFRMD8
Huge Navigator FRMD8 [HugePedia]
snp3D : Map Gene to Disease83786
BioCentury BCIQFRMD8
ClinGenFRMD8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83786
Chemical/Pharm GKB GenePA162388963
Clinical trialFRMD8
Miscellaneous
canSAR (ICR)FRMD8 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFRMD8
EVEXFRMD8
GoPubMedFRMD8
iHOPFRMD8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Fri May 19 11:12:54 CEST 2017

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