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FRMD8P1 (FERM domain containing 8 pseudogene 1)

Identity

Alias_symbol (synonym)FKSG43
Other alias-
HGNC (Hugo) FRMD8P1
LocusID (NCBI) 83957
Atlas_Id 63597
Location Xq12  [Link to chromosome band Xq12]
Location_base_pair Starts at 65550622 and ends at 65552421 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FRMD8P1   24690
Cards
Entrez_Gene (NCBI)FRMD8P1  83957  FERM domain containing 8 pseudogene 1
Aliases
GeneCards (Weizmann)FRMD8P1
Ensembl hg19 (Hinxton)ENSG00000227942 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000227942 [Gene_View]  chrX:65550622-65552421 [Contig_View]  FRMD8P1 [Vega]
ICGC DataPortalENSG00000227942
TCGA cBioPortalFRMD8P1
AceView (NCBI)FRMD8P1
Genatlas (Paris)FRMD8P1
WikiGenes83957
SOURCE (Princeton)FRMD8P1
Genetics Home Reference (NIH)FRMD8P1
Genomic and cartography
GoldenPath hg38 (UCSC)FRMD8P1  -     chrX:65550622-65552421 -  Xq12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FRMD8P1  -     Xq12   [Description]    (hg19-Feb_2009)
EnsemblFRMD8P1 - Xq12 [CytoView hg19]  FRMD8P1 - Xq12 [CytoView hg38]
Mapping of homologs : NCBIFRMD8P1 [Mapview hg19]  FRMD8P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF334945 BC128150
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FRMD8P1
Cluster EST : UnigeneHs.652967 [ NCBI ]
CGAP (NCI)Hs.652967
Alternative Splicing GalleryENSG00000227942
Gene ExpressionFRMD8P1 [ NCBI-GEO ]   FRMD8P1 [ EBI - ARRAY_EXPRESS ]   FRMD8P1 [ SEEK ]   FRMD8P1 [ MEM ]
Gene Expression Viewer (FireBrowse)FRMD8P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83957
GTEX Portal (Tissue expression)FRMD8P1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZ68   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZ68  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZ68
Splice isoforms : SwissVarQ9BZ68
PhosPhoSitePlusQ9BZ68
Domaine pattern : Prosite (Expaxy)FERM_3 (PS50057)   
Domains : Interpro (EBI)FERM/acyl-CoA-bd_prot_3-hlx    FERM_central    FERM_domain   
Domain families : Pfam (Sanger)FERM_M (PF00373)   
Domain families : Pfam (NCBI)pfam00373   
Conserved Domain (NCBI)FRMD8P1
DMDM Disease mutations83957
Blocks (Seattle)FRMD8P1
SuperfamilyQ9BZ68
Human Protein AtlasENSG00000227942
Peptide AtlasQ9BZ68
HPRD06511
IPIIPI00012481   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZ68
IntAct (EBI)Q9BZ68
FunCoupENSG00000227942
BioGRIDFRMD8P1
STRING (EMBL)FRMD8P1
ZODIACFRMD8P1
Ontologies - Pathways
QuickGOQ9BZ68
Ontology : AmiGOcytoskeleton  
Ontology : EGO-EBIcytoskeleton  
NDEx NetworkFRMD8P1
Atlas of Cancer Signalling NetworkFRMD8P1
Wikipedia pathwaysFRMD8P1
Orthology - Evolution
OrthoDB83957
GeneTree (enSembl)ENSG00000227942
Phylogenetic Trees/Animal Genes : TreeFamFRMD8P1
HOVERGENQ9BZ68
HOGENOMQ9BZ68
Homologs : HomoloGeneFRMD8P1
Homology/Alignments : Family Browser (UCSC)FRMD8P1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFRMD8P1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FRMD8P1
dbVarFRMD8P1
ClinVarFRMD8P1
1000_GenomesFRMD8P1 
Exome Variant ServerFRMD8P1
ExAC (Exome Aggregation Consortium)FRMD8P1 (select the gene name)
Genetic variants : HAPMAP83957
Genomic Variants (DGV)FRMD8P1 [DGVbeta]
DECIPHERFRMD8P1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFRMD8P1 
Mutations
ICGC Data PortalFRMD8P1 
TCGA Data PortalFRMD8P1 
Broad Tumor PortalFRMD8P1
OASIS PortalFRMD8P1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFRMD8P1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FRMD8P1
DgiDB (Drug Gene Interaction Database)FRMD8P1
DoCM (Curated mutations)FRMD8P1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FRMD8P1 (select a term)
intoGenFRMD8P1
Cancer3DFRMD8P1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFRMD8P1
Genetic Testing Registry FRMD8P1
NextProtQ9BZ68 [Medical]
TSGene83957
GENETestsFRMD8P1
Target ValidationFRMD8P1
Huge Navigator FRMD8P1 [HugePedia]
snp3D : Map Gene to Disease83957
BioCentury BCIQFRMD8P1
ClinGenFRMD8P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83957
Clinical trialFRMD8P1
Miscellaneous
canSAR (ICR)FRMD8P1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFRMD8P1
EVEXFRMD8P1
GoPubMedFRMD8P1
iHOPFRMD8P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:08:57 CEST 2017

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