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FRMPD1 (FERM and PDZ domain containing 1)

Identity

Alias_symbol (synonym)KIAA0967
FRMD2
Other alias
HGNC (Hugo) FRMPD1
LocusID (NCBI) 22844
Atlas_Id 63598
Location 9p13.2  [Link to chromosome band 9p13]
Location_base_pair Starts at 37651055 and ends at 37746904 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RCOR3 (1q32.2) / FRMPD1 (9p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FRMPD1   29159
Cards
Entrez_Gene (NCBI)FRMPD1  22844  FERM and PDZ domain containing 1
AliasesFRMD2
GeneCards (Weizmann)FRMPD1
Ensembl hg19 (Hinxton)ENSG00000070601 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000070601 [Gene_View]  chr9:37651055-37746904 [Contig_View]  FRMPD1 [Vega]
ICGC DataPortalENSG00000070601
TCGA cBioPortalFRMPD1
AceView (NCBI)FRMPD1
Genatlas (Paris)FRMPD1
WikiGenes22844
SOURCE (Princeton)FRMPD1
Genetics Home Reference (NIH)FRMPD1
Genomic and cartography
GoldenPath hg38 (UCSC)FRMPD1  -     chr9:37651055-37746904 +  9p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FRMPD1  -     9p13.2   [Description]    (hg19-Feb_2009)
EnsemblFRMPD1 - 9p13.2 [CytoView hg19]  FRMPD1 - 9p13.2 [CytoView hg38]
Mapping of homologs : NCBIFRMPD1 [Mapview hg19]  FRMPD1 [Mapview hg38]
OMIM616919   
Gene and transcription
Genbank (Entrez)AB023184 AK302739 AK302854 BC114965 BX648967
RefSeq transcript (Entrez)NM_014907
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FRMPD1
Cluster EST : UnigeneHs.163990 [ NCBI ]
CGAP (NCI)Hs.163990
Alternative Splicing GalleryENSG00000070601
Gene ExpressionFRMPD1 [ NCBI-GEO ]   FRMPD1 [ EBI - ARRAY_EXPRESS ]   FRMPD1 [ SEEK ]   FRMPD1 [ MEM ]
Gene Expression Viewer (FireBrowse)FRMPD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22844
GTEX Portal (Tissue expression)FRMPD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SYB0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SYB0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SYB0
Splice isoforms : SwissVarQ5SYB0
PhosPhoSitePlusQ5SYB0
Domaine pattern : Prosite (Expaxy)FERM_3 (PS50057)    PDZ (PS50106)   
Domains : Interpro (EBI)Band_41_domain    FERM/acyl-CoA-bd_prot_3-hlx    FERM_central    FERM_domain    PDZ    PH_dom-like    Ubiquitin-rel_dom   
Domain families : Pfam (Sanger)FERM_M (PF00373)    PDZ (PF00595)   
Domain families : Pfam (NCBI)pfam00373    pfam00595   
Domain families : Smart (EMBL)B41 (SM00295)  PDZ (SM00228)  
Conserved Domain (NCBI)FRMPD1
DMDM Disease mutations22844
Blocks (Seattle)FRMPD1
PDB (SRS)2EDV    4G2V   
PDB (PDBSum)2EDV    4G2V   
PDB (IMB)2EDV    4G2V   
PDB (RSDB)2EDV    4G2V   
Structural Biology KnowledgeBase2EDV    4G2V   
SCOP (Structural Classification of Proteins)2EDV    4G2V   
CATH (Classification of proteins structures)2EDV    4G2V   
SuperfamilyQ5SYB0
Human Protein AtlasENSG00000070601
Peptide AtlasQ5SYB0
HPRD17018
IPIIPI00646328   IPI01015149   IPI01014514   IPI01013290   
Protein Interaction databases
DIP (DOE-UCLA)Q5SYB0
IntAct (EBI)Q5SYB0
FunCoupENSG00000070601
BioGRIDFRMPD1
STRING (EMBL)FRMPD1
ZODIACFRMPD1
Ontologies - Pathways
QuickGOQ5SYB0
Ontology : AmiGOprotein binding  cytosol  cytoskeleton  plasma membrane  extracellular exosome  
Ontology : EGO-EBIprotein binding  cytosol  cytoskeleton  plasma membrane  extracellular exosome  
NDEx NetworkFRMPD1
Atlas of Cancer Signalling NetworkFRMPD1
Wikipedia pathwaysFRMPD1
Orthology - Evolution
OrthoDB22844
GeneTree (enSembl)ENSG00000070601
Phylogenetic Trees/Animal Genes : TreeFamFRMPD1
HOVERGENQ5SYB0
HOGENOMQ5SYB0
Homologs : HomoloGeneFRMPD1
Homology/Alignments : Family Browser (UCSC)FRMPD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFRMPD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FRMPD1
dbVarFRMPD1
ClinVarFRMPD1
1000_GenomesFRMPD1 
Exome Variant ServerFRMPD1
ExAC (Exome Aggregation Consortium)FRMPD1 (select the gene name)
Genetic variants : HAPMAP22844
Genomic Variants (DGV)FRMPD1 [DGVbeta]
DECIPHERFRMPD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFRMPD1 
Mutations
ICGC Data PortalFRMPD1 
TCGA Data PortalFRMPD1 
Broad Tumor PortalFRMPD1
OASIS PortalFRMPD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFRMPD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFRMPD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FRMPD1
DgiDB (Drug Gene Interaction Database)FRMPD1
DoCM (Curated mutations)FRMPD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FRMPD1 (select a term)
intoGenFRMPD1
Cancer3DFRMPD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616919   
Orphanet
MedgenFRMPD1
Genetic Testing Registry FRMPD1
NextProtQ5SYB0 [Medical]
TSGene22844
GENETestsFRMPD1
Target ValidationFRMPD1
Huge Navigator FRMPD1 [HugePedia]
snp3D : Map Gene to Disease22844
BioCentury BCIQFRMPD1
ClinGenFRMPD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22844
Chemical/Pharm GKB GenePA134910182
Clinical trialFRMPD1
Miscellaneous
canSAR (ICR)FRMPD1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFRMPD1
EVEXFRMPD1
GoPubMedFRMPD1
iHOPFRMPD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:08:57 CEST 2017

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