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FRMPD2B (FERM and PDZ domain containing 2B, pseudogene)

Identity

Alias_namesPDZK5A
PDZD5A
FRMPD2L1
FRMPD2P2
PDZK5B
PDZD5B
FRMPD2L2
FRMPD2P1
PDZ domain containing 5A
FERM and PDZ domain containing 2 like 1
FERM and PDZ domain containing 2 pseudogene 2
PDZ domain containing 5B
FERM and PDZ domain containing 2 like 2
FERM and PDZ domain containing 2 pseudogene 1
Alias_symbol (synonym)yX59F3.2
bA556L1.2
Other aliasFRMPDP2
HGNC (Hugo) FRMPD2B
LocusID (NCBI) 728798
Atlas_Id 63600
Location 10q11.22  [Link to chromosome band 10q11]
Location_base_pair Starts at 48157072 and ends at 48175152 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FRMPD2B   16843
Cards
Entrez_Gene (NCBI)FRMPD2B  728798  FERM and PDZ domain containing 2B, pseudogene
AliasesFRMPD2L1; FRMPD2L2; FRMPD2P1; FRMPD2P2; 
FRMPDP2; PDZD5A; PDZD5B; PDZK5A; PDZK5B; bA556L1.2; yX59F3.2
GeneCards (Weizmann)FRMPD2B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:48157072-48175152 [Contig_View]  FRMPD2B [Vega]
TCGA cBioPortalFRMPD2B
AceView (NCBI)FRMPD2B
Genatlas (Paris)FRMPD2B
WikiGenes728798
SOURCE (Princeton)FRMPD2B
Genetics Home Reference (NIH)FRMPD2B
Genomic and cartography
GoldenPath hg38 (UCSC)FRMPD2B  -     chr10:48157072-48175152 -  10q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FRMPD2B  -     10q11.22   [Description]    (hg19-Feb_2009)
EnsemblFRMPD2B - 10q11.22 [CytoView hg19]  FRMPD2B - 10q11.22 [CytoView hg38]
Mapping of homologs : NCBIFRMPD2B [Mapview hg19]  FRMPD2B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK294650 AK313659 AK315971 BC071635 BC072395
RefSeq transcript (Entrez)NM_001042515 NM_001042516 NM_001042524 NM_001042525
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FRMPD2B
Cluster EST : UnigeneHs.709611 [ NCBI ]
CGAP (NCI)Hs.709611
Gene ExpressionFRMPD2B [ NCBI-GEO ]   FRMPD2B [ EBI - ARRAY_EXPRESS ]   FRMPD2B [ SEEK ]   FRMPD2B [ MEM ]
Gene Expression Viewer (FireBrowse)FRMPD2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728798
GTEX Portal (Tissue expression)FRMPD2B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IN97   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IN97  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IN97
Splice isoforms : SwissVarQ6IN97
PhosPhoSitePlusQ6IN97
Domaine pattern : Prosite (Expaxy)PDZ (PS50106)   
Domains : Interpro (EBI)FRMPD2    PDZ   
Domain families : Pfam (Sanger)PDZ (PF00595)   
Domain families : Pfam (NCBI)pfam00595   
Domain families : Smart (EMBL)PDZ (SM00228)  
Conserved Domain (NCBI)FRMPD2B
DMDM Disease mutations728798
Blocks (Seattle)FRMPD2B
SuperfamilyQ6IN97
Peptide AtlasQ6IN97
Protein Interaction databases
DIP (DOE-UCLA)Q6IN97
IntAct (EBI)Q6IN97
BioGRIDFRMPD2B
STRING (EMBL)FRMPD2B
ZODIACFRMPD2B
Ontologies - Pathways
QuickGOQ6IN97
Ontology : AmiGObicellular tight junction assembly  
Ontology : EGO-EBIbicellular tight junction assembly  
NDEx NetworkFRMPD2B
Atlas of Cancer Signalling NetworkFRMPD2B
Wikipedia pathwaysFRMPD2B
Orthology - Evolution
OrthoDB728798
Phylogenetic Trees/Animal Genes : TreeFamFRMPD2B
HOVERGENQ6IN97
HOGENOMQ6IN97
Homologs : HomoloGeneFRMPD2B
Homology/Alignments : Family Browser (UCSC)FRMPD2B
Gene fusions - Rearrangements
Fusion: Tumor Portal FRMPD2B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFRMPD2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FRMPD2B
dbVarFRMPD2B
ClinVarFRMPD2B
1000_GenomesFRMPD2B 
Exome Variant ServerFRMPD2B
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP728798
Genomic Variants (DGV)FRMPD2B [DGVbeta]
DECIPHERFRMPD2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFRMPD2B 
Mutations
ICGC Data PortalFRMPD2B 
TCGA Data PortalFRMPD2B 
Broad Tumor PortalFRMPD2B
OASIS PortalFRMPD2B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFRMPD2B
BioMutasearch FRMPD2B
DgiDB (Drug Gene Interaction Database)FRMPD2B
DoCM (Curated mutations)FRMPD2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FRMPD2B (select a term)
intoGenFRMPD2B
Cancer3DFRMPD2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFRMPD2B
Genetic Testing Registry FRMPD2B
NextProtQ6IN97 [Medical]
TSGene728798
GENETestsFRMPD2B
Target ValidationFRMPD2B
Huge Navigator FRMPD2B [HugePedia]
snp3D : Map Gene to Disease728798
BioCentury BCIQFRMPD2B
ClinGenFRMPD2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728798
Chemical/Pharm GKB GenePA162388989
Clinical trialFRMPD2B
Miscellaneous
canSAR (ICR)FRMPD2B (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFRMPD2B
EVEXFRMPD2B
GoPubMedFRMPD2B
iHOPFRMPD2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:48:24 CET 2017

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