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FRMPD3 (FERM and PDZ domain containing 3)

Identity

Alias_symbol (synonym)RP5-1070B1.1
KIAA1817
Other alias-
HGNC (Hugo) FRMPD3
LocusID (NCBI) 84443
Atlas_Id 63601
Location Xq22.3  [Link to chromosome band Xq22]
Location_base_pair Starts at 107522450 and ends at 107605244 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FRMPD3 (Xq22.3) / RBM8A (1q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FRMPD3   29382
Cards
Entrez_Gene((NCBM)/a>FRMPD3  84443  FERM and PDZ domain containing 3
Aliases
GeneCards (Weizmann)FRMPD3
Ensembl hg19 (Hinxton)ENSG00000147234 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147234 [Gene_View]  chrX:107522450-107605244 [Contig_View]  FRMPD3 [Vega]
ICGC DataPortalENSG00000147234
TCGA cBioPortalFRMPD3
AceView (NCBI)FRMPD3
Genatlas (Paris)FRMPD3
WikiGenes84443
SOURCE (Princeton)FRMPD3
Genetics Home Reference (NIH)FRMPD3
Genomic and cartography
GoldenPath hg38 (UCSC)FRMPD3  -     chrX:107522450-107605244 +  Xq22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FRMPD3  -     Xq22.3   [Description]    (hg19-Feb_2009)
EnsemblFRMPD3 - Xq22.3 [CytoView hg19]  FRMPD3 - Xq22.3 [CytoView hg38]
Mapping of homologs : NCBIFRMPD3 [Mapview hg19]  FRMPD3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB058720
RefSeq transcript (Entrez)NM_032428
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FRMPD3
Cluster EST : UnigeneHs.496546 [ NCBI ]
CGAP (NCI)Hs.496546
Alternative Splicing GalleryENSG00000147234
Gene ExpressionFRMPD3 [ NCBI-GEO ]   FRMPD3 [ EBI - ARRAY_EXPRESS ]   FRMPD3 [ SEEK ]   FRMPD3 [ MEM ]
Gene Expression Viewer (FireBrowse)FRMPD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84443
GTEX Portal (Tissue expression)FRMPD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JV73   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JV73  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JV73
Splice isoforms : SwissVarQ5JV73
PhosPhoSitePlusQ5JV73
Domaine pattern : Prosite (Expaxy)FERM_3 (PS50057)    PDZ (PS50106)   
Domains : Interpro (EBI)Band_41_domain    FERM_central    FERM_domain    PDZ    PH_dom-like    Ubiquitin-rel_dom   
Domain families : Pfam (Sanger)FERM_M (PF00373)    PDZ (PF00595)   
Domain families : Pfam (NCBI)pfam00373    pfam00595   
Domain families : Smart (EMBL)B41 (SM00295)  PDZ (SM00228)  
Conserved Domain (NCBI)FRMPD3
DMDM Disease mutations84443
Blocks (Seattle)FRMPD3
SuperfamilyQ5JV73
Human Protein AtlasENSG00000147234
Peptide AtlasQ5JV73
IPIIPI00064201   
Protein Interaction databases
DIP (DOE-UCLA)Q5JV73
IntAct (EBI)Q5JV73
FunCoupENSG00000147234
BioGRIDFRMPD3
STRING (EMBL)FRMPD3
ZODIACFRMPD3
Ontologies - Pathways
QuickGOQ5JV73
Ontology : AmiGOcytoskeleton  plasma membrane  secretory granule membrane  neutrophil degranulation  tertiary granule membrane  
Ontology : EGO-EBIcytoskeleton  plasma membrane  secretory granule membrane  neutrophil degranulation  tertiary granule membrane  
NDEx NetworkFRMPD3
Atlas of Cancer Signalling NetworkFRMPD3
Wikipedia pathwaysFRMPD3
Orthology - Evolution
OrthoDB84443
GeneTree (enSembl)ENSG00000147234
Phylogenetic Trees/Animal Genes : TreeFamFRMPD3
HOVERGENQ5JV73
HOGENOMQ5JV73
Homologs : HomoloGeneFRMPD3
Homology/Alignments : Family Browser (UCSC)FRMPD3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFRMPD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FRMPD3
dbVarFRMPD3
ClinVarFRMPD3
1000_GenomesFRMPD3 
Exome Variant ServerFRMPD3
ExAC (Exome Aggregation Consortium)FRMPD3 (select the gene name) žTR:Genetic variants : HAPMAP84443
Genomic Variants (DGV)FRMPD3 [DGVbeta]
DECIPHERFRMPD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFRMPD3 
Mutations
ICGC Data PortalFRMPD3 
TCGA Data PortalFRMPD3 
Broad Tumor PortalFRMPD3
OASIS PortalFRMPD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFRMPD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFRMPD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch FRMPD3
DgiDB (Drug Gene Interaction Database)FRMPD3
DoCM (Curated mutations)FRMPD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FRMPD3 (select a term)
intoGenFRMPD3
Cancer3DFRMPD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFRMPD3
Genetic Testing Registry FRMPD3
NextProtQ5JV73 [Medical]
TSGene84443
GENETestsFRMPD3
Target ValidationFRMPD3
Huge Navigator|/TD>*FRMPD3 [HugePedia]
snp3D : Map Gene to Disease84443
BioCentury BCIQFRMPD3
ClinGenFRMPD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84443
Chemical/Pharm GKB GenePA143485474
Clinical trialFRMPD3
Miscellaneous
canSAR (ICR)FRMPD3 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFRMPD3
EVEXFRMPD3
GoPubMedFRMPD3
iHOPFRMPD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:08:57 CEST 2017

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