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FRRS1L (ferric chelate reductase 1 like)

Identity

Alias (NCBI)C9orf4
CG-6
CG6
EIEE37
HGNC (Hugo) FRRS1L
HGNC Alias symbCG-6
HGNC Previous nameC9orf4
HGNC Previous namechromosome 9 open reading frame 4
 ferric-chelate reductase 1-like
LocusID (NCBI) 23732
Atlas_Id 63605
Location 9q31.3  [Link to chromosome band 9q31]
Location_base_pair Starts at 109130293 and ends at 109167291 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TMEM245 (9q31.3) / FRRS1L (9q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  TMEM245/FRRS1L (9q31)


External links

Nomenclature
HGNC (Hugo)FRRS1L   1362
Cards
Entrez_Gene (NCBI)FRRS1L    ferric chelate reductase 1 like
AliasesC9orf4; CG-6; CG6; EIEE37
GeneCards (Weizmann)FRRS1L
Ensembl hg19 (Hinxton)ENSG00000260230 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260230 [Gene_View]  ENSG00000260230 [Sequence]  chr9:109130293-109167291 [Contig_View]  FRRS1L [Vega]
ICGC DataPortalENSG00000260230
TCGA cBioPortalFRRS1L
AceView (NCBI)FRRS1L
Genatlas (Paris)FRRS1L
SOURCE (Princeton)FRRS1L
Genetics Home Reference (NIH)FRRS1L
Genomic and cartography
GoldenPath hg38 (UCSC)FRRS1L  -     chr9:109130293-109167291 -  9q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FRRS1L  -     9q31.3   [Description]    (hg19-Feb_2009)
GoldenPathFRRS1L - 9q31.3 [CytoView hg19]  FRRS1L - 9q31.3 [CytoView hg38]
ImmunoBaseENSG00000260230
genome Data Viewer NCBIFRRS1L [Mapview hg19]  
OMIM604574   616981   
Gene and transcription
Genbank (Entrez)AA629978 AF038201 AF155065 AI089389 AK124661
RefSeq transcript (Entrez)NM_014334
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FRRS1L
Alternative Splicing GalleryENSG00000260230
Gene ExpressionFRRS1L [ NCBI-GEO ]   FRRS1L [ EBI - ARRAY_EXPRESS ]   FRRS1L [ SEEK ]   FRRS1L [ MEM ]
Gene Expression Viewer (FireBrowse)FRRS1L [ Firebrowse - Broad ]
GenevisibleExpression of FRRS1L in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23732
GTEX Portal (Tissue expression)FRRS1L
Human Protein AtlasENSG00000260230-FRRS1L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P0K9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P0K9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P0K9
Splice isoforms : SwissVarQ9P0K9
PhosPhoSitePlusQ9P0K9
Domaine pattern : Prosite (Expaxy)DOMON (PS50836)   
Domains : Interpro (EBI)DOMON_domain    FRRS1L   
Domain families : Pfam (Sanger)DOMON (PF03351)   
Domain families : Pfam (NCBI)pfam03351   
Domain families : Smart (EMBL)DoH (SM00664)  
Conserved Domain (NCBI)FRRS1L
Blocks (Seattle)FRRS1L
SuperfamilyQ9P0K9
Human Protein Atlas [tissue]ENSG00000260230-FRRS1L [tissue]
Peptide AtlasQ9P0K9
HPRD18583
IPIIPI00292304   
Protein Interaction databases
DIP (DOE-UCLA)Q9P0K9
IntAct (EBI)Q9P0K9
BioGRIDFRRS1L
STRING (EMBL)FRRS1L
ZODIACFRRS1L
Ontologies - Pathways
QuickGOQ9P0K9
Ontology : AmiGOmolecular_function  cellular_component  plasma membrane  integral component of membrane  cell junction  synapse  regulation of postsynaptic membrane neurotransmitter receptor levels  regulation of glutamate receptor signaling pathway  
Ontology : EGO-EBImolecular_function  cellular_component  plasma membrane  integral component of membrane  cell junction  synapse  regulation of postsynaptic membrane neurotransmitter receptor levels  regulation of glutamate receptor signaling pathway  
NDEx NetworkFRRS1L
Atlas of Cancer Signalling NetworkFRRS1L
Wikipedia pathwaysFRRS1L
Orthology - Evolution
OrthoDB23732
GeneTree (enSembl)ENSG00000260230
Phylogenetic Trees/Animal Genes : TreeFamFRRS1L
HOGENOMQ9P0K9
Homologs : HomoloGeneFRRS1L
Homology/Alignments : Family Browser (UCSC)FRRS1L
Gene fusions - Rearrangements
Fusion : QuiverFRRS1L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFRRS1L [hg38]
dbVarFRRS1L
ClinVarFRRS1L
MonarchFRRS1L
1000_GenomesFRRS1L 
Exome Variant ServerFRRS1L
GNOMAD BrowserENSG00000260230
Varsome BrowserFRRS1L
Genomic Variants (DGV)FRRS1L [DGVbeta]
DECIPHERFRRS1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFRRS1L 
Mutations
ICGC Data PortalFRRS1L 
TCGA Data PortalFRRS1L 
Broad Tumor PortalFRRS1L
OASIS PortalFRRS1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFRRS1L  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFRRS1L
Mutations and Diseases : HGMDFRRS1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FRRS1L
DgiDB (Drug Gene Interaction Database)FRRS1L
DoCM (Curated mutations)FRRS1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FRRS1L (select a term)
intoGenFRRS1L
Cancer3DFRRS1L(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604574    616981   
Orphanet
DisGeNETFRRS1L
MedgenFRRS1L
Genetic Testing Registry FRRS1L
NextProtQ9P0K9 [Medical]
GENETestsFRRS1L
Target ValidationFRRS1L
Huge Navigator FRRS1L [HugePedia]
ClinGenFRRS1L
Clinical trials, drugs, therapy
MyCancerGenomeFRRS1L
Protein Interactions : CTD
Pharm GKB GenePA25979
Clinical trialFRRS1L
Miscellaneous
canSAR (ICR)FRRS1L (select the gene name)
HarmonizomeFRRS1L
DataMed IndexFRRS1L
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFRRS1L
EVEXFRRS1L
GoPubMedFRRS1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:55:02 CET 2020

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