Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FRRS1L (ferric chelate reductase 1 like)

Identity

Alias_namesC9orf4
chromosome 9 open reading frame 4
ferric-chelate reductase 1-like
Alias_symbol (synonym)CG-6
Other aliasCG6
EIEE37
HGNC (Hugo) FRRS1L
LocusID (NCBI) 23732
Atlas_Id 63605
Location 9q31.3  [Link to chromosome band 9q31]
Location_base_pair Starts at 109130293 and ends at 109167291 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TMEM245 (9q31.3) / FRRS1L (9q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FRRS1L   1362
Cards
Entrez_Gene (NCBI)FRRS1L  23732  ferric chelate reductase 1 like
AliasesC9orf4; CG-6; CG6; EIEE37
GeneCards (Weizmann)FRRS1L
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:109130293-109167291 [Contig_View]  FRRS1L [Vega]
TCGA cBioPortalFRRS1L
AceView (NCBI)FRRS1L
Genatlas (Paris)FRRS1L
WikiGenes23732
SOURCE (Princeton)FRRS1L
Genetics Home Reference (NIH)FRRS1L
Genomic and cartography
GoldenPath hg38 (UCSC)FRRS1L  -     chr9:109130293-109167291 -  9q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FRRS1L  -     9q31.3   [Description]    (hg19-Feb_2009)
EnsemblFRRS1L - 9q31.3 [CytoView hg19]  FRRS1L - 9q31.3 [CytoView hg38]
Mapping of homologs : NCBIFRRS1L [Mapview hg19]  FRRS1L [Mapview hg38]
OMIM604574   616981   
Gene and transcription
Genbank (Entrez)AA629978 AF038201 AF155065 AI089389 AL390170
RefSeq transcript (Entrez)NM_014334
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FRRS1L
Cluster EST : UnigeneHs.587484 [ NCBI ]
CGAP (NCI)Hs.587484
Gene ExpressionFRRS1L [ NCBI-GEO ]   FRRS1L [ EBI - ARRAY_EXPRESS ]   FRRS1L [ SEEK ]   FRRS1L [ MEM ]
Gene Expression Viewer (FireBrowse)FRRS1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23732
GTEX Portal (Tissue expression)FRRS1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P0K9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P0K9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P0K9
Splice isoforms : SwissVarQ9P0K9
PhosPhoSitePlusQ9P0K9
Domaine pattern : Prosite (Expaxy)DOMON (PS50836)   
Domains : Interpro (EBI)DOMON_domain   
Domain families : Pfam (Sanger)DOMON (PF03351)   
Domain families : Pfam (NCBI)pfam03351   
Domain families : Smart (EMBL)DoH (SM00664)  
Conserved Domain (NCBI)FRRS1L
DMDM Disease mutations23732
Blocks (Seattle)FRRS1L
SuperfamilyQ9P0K9
Peptide AtlasQ9P0K9
HPRD18583
IPIIPI00292304   
Protein Interaction databases
DIP (DOE-UCLA)Q9P0K9
IntAct (EBI)Q9P0K9
BioGRIDFRRS1L
STRING (EMBL)FRRS1L
ZODIACFRRS1L
Ontologies - Pathways
QuickGOQ9P0K9
Ontology : AmiGOmolecular_function  cellular_component  plasma membrane  biological_process  integral component of membrane  cell junction  synapse  regulation of glutamate receptor signaling pathway  
Ontology : EGO-EBImolecular_function  cellular_component  plasma membrane  biological_process  integral component of membrane  cell junction  synapse  regulation of glutamate receptor signaling pathway  
NDEx NetworkFRRS1L
Atlas of Cancer Signalling NetworkFRRS1L
Wikipedia pathwaysFRRS1L
Orthology - Evolution
OrthoDB23732
Phylogenetic Trees/Animal Genes : TreeFamFRRS1L
HOVERGENQ9P0K9
HOGENOMQ9P0K9
Homologs : HomoloGeneFRRS1L
Homology/Alignments : Family Browser (UCSC)FRRS1L
Gene fusions - Rearrangements
Tumor Fusion PortalFRRS1L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFRRS1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FRRS1L
dbVarFRRS1L
ClinVarFRRS1L
1000_GenomesFRRS1L 
Exome Variant ServerFRRS1L
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP23732
Genomic Variants (DGV)FRRS1L [DGVbeta]
DECIPHERFRRS1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFRRS1L 
Mutations
ICGC Data PortalFRRS1L 
TCGA Data PortalFRRS1L 
Broad Tumor PortalFRRS1L
OASIS PortalFRRS1L [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFRRS1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FRRS1L
DgiDB (Drug Gene Interaction Database)FRRS1L
DoCM (Curated mutations)FRRS1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FRRS1L (select a term)
intoGenFRRS1L
Cancer3DFRRS1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604574    616981   
Orphanet
DisGeNETFRRS1L
MedgenFRRS1L
Genetic Testing Registry FRRS1L
NextProtQ9P0K9 [Medical]
TSGene23732
GENETestsFRRS1L
Target ValidationFRRS1L
Huge Navigator FRRS1L [HugePedia]
snp3D : Map Gene to Disease23732
BioCentury BCIQFRRS1L
ClinGenFRRS1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23732
Chemical/Pharm GKB GenePA25979
Clinical trialFRRS1L
Miscellaneous
canSAR (ICR)FRRS1L (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFRRS1L
EVEXFRRS1L
GoPubMedFRRS1L
iHOPFRRS1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 13:19:49 CET 2017

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