Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FRY (FRY microtubule binding protein)

Identity

Alias (NCBI)13CDNA73
214K23.2
C13orf14
CG003
bA207N4.2
bA37E23.1
HGNC (Hugo) FRY
HGNC Alias symbbA37E23.1
13CDNA73
CG003
HGNC Previous nameC13orf14
HGNC Previous namechromosome 13 open reading frame 14
 furry homolog (Drosophila)
LocusID (NCBI) 10129
Atlas_Id 63606
Location 13q13.1  [Link to chromosome band 13q13]
Location_base_pair Starts at 32031300 and ends at 32296639 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC91 (12p11.22) / FRY (13q13.1)EEF1DP3 (13q13.1) / FRY (13q13.1)FRY (13q13.1) / TMEM127 (2q11.2)
LRRC1 (6p12.1) / FRY (13q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(13;13)(q13;q13) EEF1DP3/FRY
t(13;13)(q13;q13) EEF1DP3/FRY


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 9 ]
  t(6;13)(p12;q13) LRRC1/FRY
EEF1DP3/FRY (13q13)
EEF1DP3/FRY (13q13)
EEF1DP3/FRY (13q13)
EEF1DP3/FRY (13q13)
EEF1DP3/FRY (13q13)
EEF1DP3/FRY (13q13)
EEF1DP3/FRY (13q13)
EEF1DP3/FRY (13q13)


External links

Nomenclature
HGNC (Hugo)FRY   20367
Cards
Entrez_Gene (NCBI)FRY    FRY microtubule binding protein
Aliases13CDNA73; 214K23.2; C13orf14; CG003; 
bA207N4.2; bA37E23.1
GeneCards (Weizmann)FRY
Ensembl hg19 (Hinxton)ENSG00000073910 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000073910 [Gene_View]  ENSG00000073910 [Sequence]  chr13:32031300-32296639 [Contig_View]  FRY [Vega]
ICGC DataPortalENSG00000073910
TCGA cBioPortalFRY
AceView (NCBI)FRY
Genatlas (Paris)FRY
SOURCE (Princeton)FRY
Genetics Home Reference (NIH)FRY
Genomic and cartography
GoldenPath hg38 (UCSC)FRY  -     chr13:32031300-32296639 +  13q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FRY  -     13q13.1   [Description]    (hg19-Feb_2009)
GoldenPathFRY - 13q13.1 [CytoView hg19]  FRY - 13q13.1 [CytoView hg38]
ImmunoBaseENSG00000073910
genome Data Viewer NCBIFRY [Mapview hg19]  
OMIM614818   
Gene and transcription
Genbank (Entrez)AA993094 AK091422 AK298021 AL049784 BC036296
RefSeq transcript (Entrez)NM_023037
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FRY
Alternative Splicing GalleryENSG00000073910
Gene ExpressionFRY [ NCBI-GEO ]   FRY [ EBI - ARRAY_EXPRESS ]   FRY [ SEEK ]   FRY [ MEM ]
Gene Expression Viewer (FireBrowse)FRY [ Firebrowse - Broad ]
GenevisibleExpression of FRY in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10129
GTEX Portal (Tissue expression)FRY
Human Protein AtlasENSG00000073910-FRY [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TBA9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TBA9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TBA9
Splice isoforms : SwissVarQ5TBA9
PhosPhoSitePlusQ5TBA9
Domains : Interpro (EBI)Cell_morpho_N    Cell_Morphogen_C    Furry/Tao3/Mor2    MOR2-PAG1_mid   
Domain families : Pfam (Sanger)MOR2-PAG1_C (PF14225)    MOR2-PAG1_mid (PF14228)    MOR2-PAG1_N (PF14222)   
Domain families : Pfam (NCBI)pfam14225    pfam14228    pfam14222   
Conserved Domain (NCBI)FRY
Blocks (Seattle)FRY
SuperfamilyQ5TBA9
Human Protein Atlas [tissue]ENSG00000073910-FRY [tissue]
Peptide AtlasQ5TBA9
HPRD10821
IPIIPI01010139   IPI00745047   IPI00552853   IPI00385010   IPI00294542   IPI00746419   IPI00514412   IPI00984417   
Protein Interaction databases
DIP (DOE-UCLA)Q5TBA9
IntAct (EBI)Q5TBA9
BioGRIDFRY
STRING (EMBL)FRY
ZODIACFRY
Ontologies - Pathways
QuickGOQ5TBA9
Ontology : AmiGOcell morphogenesis  spindle pole  enzyme inhibitor activity  microtubule organizing center  cell cortex  neuron projection development  negative regulation of catalytic activity  negative regulation of tubulin deacetylation  
Ontology : EGO-EBIcell morphogenesis  spindle pole  enzyme inhibitor activity  microtubule organizing center  cell cortex  neuron projection development  negative regulation of catalytic activity  negative regulation of tubulin deacetylation  
NDEx NetworkFRY
Atlas of Cancer Signalling NetworkFRY
Wikipedia pathwaysFRY
Orthology - Evolution
OrthoDB10129
GeneTree (enSembl)ENSG00000073910
Phylogenetic Trees/Animal Genes : TreeFamFRY
HOGENOMQ5TBA9
Homologs : HomoloGeneFRY
Homology/Alignments : Family Browser (UCSC)FRY
Gene fusions - Rearrangements
Fusion : QuiverFRY
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFRY [hg38]
dbVarFRY
ClinVarFRY
MonarchFRY
1000_GenomesFRY 
Exome Variant ServerFRY
GNOMAD BrowserENSG00000073910
Varsome BrowserFRY
Genomic Variants (DGV)FRY [DGVbeta]
DECIPHERFRY [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFRY 
Mutations
ICGC Data PortalFRY 
TCGA Data PortalFRY 
Broad Tumor PortalFRY
OASIS PortalFRY [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFRY  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFRY
Mutations and Diseases : HGMDFRY
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FRY
DgiDB (Drug Gene Interaction Database)FRY
DoCM (Curated mutations)FRY (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FRY (select a term)
intoGenFRY
Cancer3DFRY(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614818   
Orphanet
DisGeNETFRY
MedgenFRY
Genetic Testing Registry FRY
NextProtQ5TBA9 [Medical]
GENETestsFRY
Target ValidationFRY
Huge Navigator FRY [HugePedia]
ClinGenFRY
Clinical trials, drugs, therapy
MyCancerGenomeFRY
Protein Interactions : CTD
Pharm GKB GenePA134927490
Clinical trialFRY
Miscellaneous
canSAR (ICR)FRY (select the gene name)
HarmonizomeFRY
DataMed IndexFRY
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFRY
EVEXFRY
GoPubMedFRY
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 16:55:02 CET 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.