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FSCN2 (fascin actin-bundling protein 2, retinal)

Identity

Other namesRFSN
RP30
HGNC (Hugo) FSCN2
LocusID (NCBI) 25794
Atlas_Id 50295
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 79495417 and ends at 79504156 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FSCN2   3960
Cards
Entrez_Gene (NCBI)FSCN2  25794  fascin actin-bundling protein 2, retinal
AliasesRFSN; RP30
GeneCards (Weizmann)FSCN2
Ensembl hg19 (Hinxton)ENSG00000186765 [Gene_View]  chr17:79495417-79504156 [Contig_View]  FSCN2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186765 [Gene_View]  chr17:79495417-79504156 [Contig_View]  FSCN2 [Vega]
ICGC DataPortalENSG00000186765
TCGA cBioPortalFSCN2
AceView (NCBI)FSCN2
Genatlas (Paris)FSCN2
WikiGenes25794
SOURCE (Princeton)FSCN2
Genomic and cartography
GoldenPath hg19 (UCSC)FSCN2  -     chr17:79495417-79504156 +  17q25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FSCN2  -     17q25.3   [Description]    (hg38-Dec_2013)
EnsemblFSCN2 - 17q25.3 [CytoView hg19]  FSCN2 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBIFSCN2 [Mapview hg19]  FSCN2 [Mapview hg38]
OMIM607643   607921   
Gene and transcription
Genbank (Entrez)AA046878 AA059324 AF030165 AI189621 BC126295
RefSeq transcript (Entrez)NM_001077182 NM_012418
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_015964 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)FSCN2
Cluster EST : UnigeneHs.118555 [ NCBI ]
CGAP (NCI)Hs.118555
Alternative Splicing GalleryENSG00000186765
Gene ExpressionFSCN2 [ NCBI-GEO ]   FSCN2 [ EBI - ARRAY_EXPRESS ]   FSCN2 [ SEEK ]   FSCN2 [ MEM ]
Gene Expression Viewer (FireBrowse)FSCN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25794
GTEX Portal (Tissue expression)FSCN2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14926 (Uniprot)
NextProtO14926  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14926
Splice isoforms : SwissVarO14926 (Swissvar)
PhosPhoSitePlusO14926
Domains : Interpro (EBI)Actin_cross-linking    Fascin    Fascin-domain    Fascin_metazoans    FSCN2   
Domain families : Pfam (Sanger)Fascin (PF06268)   
Domain families : Pfam (NCBI)pfam06268   
DMDM Disease mutations25794
Blocks (Seattle)FSCN2
SuperfamilyO14926
Human Protein AtlasENSG00000186765
Peptide AtlasO14926
HPRD06366
IPIIPI00018293   IPI00796130   
Protein Interaction databases
DIP (DOE-UCLA)O14926
IntAct (EBI)O14926
FunCoupENSG00000186765
BioGRIDFSCN2
STRING (EMBL)FSCN2
ZODIACFSCN2
Ontologies - Pathways
QuickGOO14926
Ontology : AmiGOactin binding  cytoplasm  visual perception  anatomical structure morphogenesis  actin cytoskeleton  actin cytoskeleton organization  protein binding, bridging  stereocilium  eye photoreceptor cell development  actin filament binding  actin filament bundle assembly  
Ontology : EGO-EBIactin binding  cytoplasm  visual perception  anatomical structure morphogenesis  actin cytoskeleton  actin cytoskeleton organization  protein binding, bridging  stereocilium  eye photoreceptor cell development  actin filament binding  actin filament bundle assembly  
NDEx Network
Atlas of Cancer Signalling NetworkFSCN2
Wikipedia pathwaysFSCN2
Orthology - Evolution
OrthoDB25794
GeneTree (enSembl)ENSG00000186765
Phylogenetic Trees/Animal Genes : TreeFamFSCN2
Homologs : HomoloGeneFSCN2
Homology/Alignments : Family Browser (UCSC)FSCN2
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerFSCN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FSCN2
dbVarFSCN2
ClinVarFSCN2
1000_GenomesFSCN2 
Exome Variant ServerFSCN2
ExAC (Exome Aggregation Consortium)FSCN2 (select the gene name)
Genetic variants : HAPMAP25794
Genomic Variants (DGV)FSCN2 [DGVbeta]
Mutations
ICGC Data PortalFSCN2 
TCGA Data PortalFSCN2 
Broad Tumor PortalFSCN2
OASIS PortalFSCN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFSCN2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch FSCN2
DgiDB (Drug Gene Interaction Database)FSCN2
DoCM (Curated mutations)FSCN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FSCN2 (select a term)
intoGenFSCN2
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)17:79495417-79504156  ENSG00000186765
CONAN: Copy Number AnalysisFSCN2 
Mutations and Diseases : HGMDFSCN2
OMIM607643    607921   
MedgenFSCN2
Genetic Testing Registry FSCN2
NextProtO14926 [Medical]
TSGene25794
GENETestsFSCN2
Huge Navigator FSCN2 [HugePedia]
snp3D : Map Gene to Disease25794
BioCentury BCIQFSCN2
ClinGenFSCN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25794
Chemical/Pharm GKB GenePA28378
Clinical trialFSCN2
Miscellaneous
canSAR (ICR)FSCN2 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFSCN2
EVEXFSCN2
GoPubMedFSCN2
iHOPFSCN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 9 19:19:24 CEST 2016

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