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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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FSCN2 (fascin actin-bundling protein 2, retinal)

Identity

Other namesRFSN
RP30
HGNC (Hugo) FSCN2
LocusID (NCBI) 25794
Location 17q25.3
Location_base_pair Starts at 79495417 and ends at 79504156 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FSCN2   3960
Cards
Entrez_Gene (NCBI)FSCN2  25794  fascin actin-bundling protein 2, retinal
GeneCards (Weizmann)FSCN2
Ensembl hg19 (Hinxton)ENSG00000186765 [Gene_View]  chr17:79495417-79504156 [Contig_View]  FSCN2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186765 [Gene_View]  chr17:79495417-79504156 [Contig_View]  FSCN2 [Vega]
ICGC DataPortalENSG00000186765
cBioPortalFSCN2
AceView (NCBI)FSCN2
Genatlas (Paris)FSCN2
WikiGenes25794
SOURCE (Princeton)FSCN2
Genomic and cartography
GoldenPath hg19 (UCSC)FSCN2  -     chr17:79495417-79504156 +  17q25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FSCN2  -     17q25.3   [Description]    (hg38-Dec_2013)
EnsemblFSCN2 - 17q25.3 [CytoView hg19]  FSCN2 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBIFSCN2 [Mapview hg19]  FSCN2 [Mapview hg38]
OMIM607643   607921   
Gene and transcription
Genbank (Entrez)AA046878 AA059324 AF030165 AI189621 BC126295
RefSeq transcript (Entrez)NM_001077182 NM_012418
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_015964 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)FSCN2
Cluster EST : UnigeneHs.118555 [ NCBI ]
CGAP (NCI)Hs.118555
Alternative Splicing : Fast-db (Paris)GSHG0012899
Alternative Splicing GalleryENSG00000186765
Gene ExpressionFSCN2 [ NCBI-GEO ]     FSCN2 [ SEEK ]   FSCN2 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14926 (Uniprot)
NextProtO14926  [Medical]
With graphics : InterProO14926
Splice isoforms : SwissVarO14926 (Swissvar)
Domains : Interpro (EBI)Actin_cross-linking    Fascin    Fascin-domain    Fascin_metazoans    FSCN2   
Related proteins : CluSTrO14926
Domain families : Pfam (Sanger)Fascin (PF06268)   
Domain families : Pfam (NCBI)pfam06268   
DMDM Disease mutations25794
Blocks (Seattle)O14926
Human Protein AtlasENSG00000186765
Peptide AtlasO14926
HPRD06366
IPIIPI00018293   IPI00796130   
Protein Interaction databases
DIP (DOE-UCLA)O14926
IntAct (EBI)O14926
FunCoupENSG00000186765
BioGRIDFSCN2
IntegromeDBFSCN2
STRING (EMBL)FSCN2
Ontologies - Pathways
QuickGOO14926
Ontology : AmiGOactin binding  cytoplasm  visual perception  anatomical structure morphogenesis  actin cytoskeleton  actin cytoskeleton organization  protein binding, bridging  stereocilium  eye photoreceptor cell development  actin filament binding  actin filament bundle assembly  
Ontology : EGO-EBIactin binding  cytoplasm  visual perception  anatomical structure morphogenesis  actin cytoskeleton  actin cytoskeleton organization  protein binding, bridging  stereocilium  eye photoreceptor cell development  actin filament binding  actin filament bundle assembly  
Protein Interaction DatabaseFSCN2
DoCM (Curated mutations)FSCN2
Wikipedia pathwaysFSCN2
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerFSCN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FSCN2
dbVarFSCN2
ClinVarFSCN2
1000_GenomesFSCN2 
Exome Variant ServerFSCN2
SNP (GeneSNP Utah)FSCN2
SNP : HGBaseFSCN2
Genetic variants : HAPMAPFSCN2
Genomic Variants (DGV)FSCN2 [DGVbeta]
Mutations
ICGC Data PortalENSG00000186765 
Somatic Mutations in Cancer : COSMICFSCN2 
CONAN: Copy Number AnalysisFSCN2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)17:79495417-79504156
Mutations and Diseases : HGMDFSCN2
OMIM607643    607921   
MedgenFSCN2
NextProtO14926 [Medical]
GENETestsFSCN2
Disease Genetic AssociationFSCN2
Huge Navigator FSCN2 [HugePedia]  FSCN2 [HugeCancerGEM]
snp3D : Map Gene to Disease25794
DGIdb (Drug Gene Interaction db)FSCN2
General knowledge
Homologs : HomoloGeneFSCN2
Homology/Alignments : Family Browser (UCSC)FSCN2
Phylogenetic Trees/Animal Genes : TreeFamFSCN2
Chemical/Protein Interactions : CTD25794
Chemical/Pharm GKB GenePA28378
Clinical trialFSCN2
Cancer Resource (Charite)ENSG00000186765
Other databases
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
CoreMineFSCN2
GoPubMedFSCN2
iHOPFSCN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 15:26:46 CET 2015

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jlhuret@AtlasGeneticsOncology.org.