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FSCN3 (fascin actin-bundling protein 3)

Identity

Alias_namesfascin (Strongylocentrotus purpuratus) homolog 3 (actin-bundling protein, testicular)
fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)
fascin actin-bundling protein 3, testicular
Other alias-
HGNC (Hugo) FSCN3
LocusID (NCBI) 29999
Atlas_Id 63609
Location 7q32.1  [Link to chromosome band 7q32]
Location_base_pair Starts at 127593635 and ends at 127601797 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FSCN3   3961
Cards
Entrez_Gene (NCBI)FSCN3  29999  fascin actin-bundling protein 3
Aliases
GeneCards (Weizmann)FSCN3
Ensembl hg19 (Hinxton)ENSG00000106328 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106328 [Gene_View]  chr7:127593635-127601797 [Contig_View]  FSCN3 [Vega]
ICGC DataPortalENSG00000106328
TCGA cBioPortalFSCN3
AceView (NCBI)FSCN3
Genatlas (Paris)FSCN3
WikiGenes29999
SOURCE (Princeton)FSCN3
Genetics Home Reference (NIH)FSCN3
Genomic and cartography
GoldenPath hg38 (UCSC)FSCN3  -     chr7:127593635-127601797 +  7q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FSCN3  -     7q32.1   [Description]    (hg19-Feb_2009)
EnsemblFSCN3 - 7q32.1 [CytoView hg19]  FSCN3 - 7q32.1 [CytoView hg38]
Mapping of homologs : NCBIFSCN3 [Mapview hg19]  FSCN3 [Mapview hg38]
OMIM615800   
Gene and transcription
Genbank (Entrez)AF281049 AK225867 AK300518 AK301765 AK314050
RefSeq transcript (Entrez)NM_020369
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FSCN3
Cluster EST : UnigeneHs.712692 [ NCBI ]
CGAP (NCI)Hs.712692
Alternative Splicing GalleryENSG00000106328
Gene ExpressionFSCN3 [ NCBI-GEO ]   FSCN3 [ EBI - ARRAY_EXPRESS ]   FSCN3 [ SEEK ]   FSCN3 [ MEM ]
Gene Expression Viewer (FireBrowse)FSCN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29999
GTEX Portal (Tissue expression)FSCN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQT6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQT6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQT6
Splice isoforms : SwissVarQ9NQT6
PhosPhoSitePlusQ9NQT6
Domains : Interpro (EBI)Actin_cross-linking    Fascin    Fascin-domain    Fascin_metazoans    FSCN3   
Domain families : Pfam (Sanger)Fascin (PF06268)   
Domain families : Pfam (NCBI)pfam06268   
Conserved Domain (NCBI)FSCN3
DMDM Disease mutations29999
Blocks (Seattle)FSCN3
SuperfamilyQ9NQT6
Human Protein AtlasENSG00000106328
Peptide AtlasQ9NQT6
HPRD17020
IPIIPI00006902   IPI00909511   IPI00909945   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQT6
IntAct (EBI)Q9NQT6
FunCoupENSG00000106328
BioGRIDFSCN3
STRING (EMBL)FSCN3
ZODIACFSCN3
Ontologies - Pathways
QuickGOQ9NQT6
Ontology : AmiGOruffle  cytoplasm  cytoskeleton  microvillus  establishment or maintenance of cell polarity  spermatid development  anatomical structure morphogenesis  actin cytoskeleton  cell migration  lamellipodium  filopodium  growth cone  protein binding, bridging  cell projection membrane  filamentous actin  actin filament binding  actin filament bundle assembly  
Ontology : EGO-EBIruffle  cytoplasm  cytoskeleton  microvillus  establishment or maintenance of cell polarity  spermatid development  anatomical structure morphogenesis  actin cytoskeleton  cell migration  lamellipodium  filopodium  growth cone  protein binding, bridging  cell projection membrane  filamentous actin  actin filament binding  actin filament bundle assembly  
NDEx NetworkFSCN3
Atlas of Cancer Signalling NetworkFSCN3
Wikipedia pathwaysFSCN3
Orthology - Evolution
OrthoDB29999
GeneTree (enSembl)ENSG00000106328
Phylogenetic Trees/Animal Genes : TreeFamFSCN3
HOVERGENQ9NQT6
HOGENOMQ9NQT6
Homologs : HomoloGeneFSCN3
Homology/Alignments : Family Browser (UCSC)FSCN3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFSCN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FSCN3
dbVarFSCN3
ClinVarFSCN3
1000_GenomesFSCN3 
Exome Variant ServerFSCN3
ExAC (Exome Aggregation Consortium)FSCN3 (select the gene name)
Genetic variants : HAPMAP29999
Genomic Variants (DGV)FSCN3 [DGVbeta]
DECIPHERFSCN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFSCN3 
Mutations
ICGC Data PortalFSCN3 
TCGA Data PortalFSCN3 
Broad Tumor PortalFSCN3
OASIS PortalFSCN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFSCN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFSCN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FSCN3
DgiDB (Drug Gene Interaction Database)FSCN3
DoCM (Curated mutations)FSCN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FSCN3 (select a term)
intoGenFSCN3
Cancer3DFSCN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615800   
Orphanet
MedgenFSCN3
Genetic Testing Registry FSCN3
NextProtQ9NQT6 [Medical]
TSGene29999
GENETestsFSCN3
Target ValidationFSCN3
Huge Navigator FSCN3 [HugePedia]
snp3D : Map Gene to Disease29999
BioCentury BCIQFSCN3
ClinGenFSCN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29999
Chemical/Pharm GKB GenePA28379
Clinical trialFSCN3
Miscellaneous
canSAR (ICR)FSCN3 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFSCN3
EVEXFSCN3
GoPubMedFSCN3
iHOPFSCN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:08:58 CEST 2017

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