Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FSD1 (fibronectin type III and SPRY domain containing 1)

Identity

Alias_namesfibronectin type 3 and SPRY domain containing 1
Alias_symbol (synonym)MGC3213
MIR1
Other aliasGLFND
HGNC (Hugo) FSD1
LocusID (NCBI) 79187
Atlas_Id 50055
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 4304594 and ends at 4323846 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LRP11 (6q25.1) / FSD1 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FSD1   13745
Cards
Entrez_Gene (NCBI)FSD1  79187  fibronectin type III and SPRY domain containing 1
AliasesGLFND; MIR1
GeneCards (Weizmann)FSD1
Ensembl hg19 (Hinxton)ENSG00000105255 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105255 [Gene_View]  chr19:4304594-4323846 [Contig_View]  FSD1 [Vega]
ICGC DataPortalENSG00000105255
TCGA cBioPortalFSD1
AceView (NCBI)FSD1
Genatlas (Paris)FSD1
WikiGenes79187
SOURCE (Princeton)FSD1
Genetics Home Reference (NIH)FSD1
Genomic and cartography
GoldenPath hg38 (UCSC)FSD1  -     chr19:4304594-4323846 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FSD1  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblFSD1 - 19p13.3 [CytoView hg19]  FSD1 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIFSD1 [Mapview hg19]  FSD1 [Mapview hg38]
OMIM609828   
Gene and transcription
Genbank (Entrez)AF316829 AK021750 AK295523 AK303606 AK315661
RefSeq transcript (Entrez)NM_001330429 NM_024333
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FSD1
Cluster EST : UnigeneHs.28144 [ NCBI ]
CGAP (NCI)Hs.28144
Alternative Splicing GalleryENSG00000105255
Gene ExpressionFSD1 [ NCBI-GEO ]   FSD1 [ EBI - ARRAY_EXPRESS ]   FSD1 [ SEEK ]   FSD1 [ MEM ]
Gene Expression Viewer (FireBrowse)FSD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79187
GTEX Portal (Tissue expression)FSD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BTV5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BTV5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BTV5
Splice isoforms : SwissVarQ9BTV5
PhosPhoSitePlusQ9BTV5
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    COS (PS51262)    FN3 (PS50853)   
Domains : Interpro (EBI)B30.2/SPRY    Bbox_C    ConA-like_dom    COS_domain    FN3_dom    Ig-like_fold    SPRY_dom   
Domain families : Pfam (Sanger)fn3 (PF00041)    SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam00041    pfam00622   
Domain families : Smart (EMBL)BBC (SM00502)  FN3 (SM00060)  SPRY (SM00449)  
Conserved Domain (NCBI)FSD1
DMDM Disease mutations79187
Blocks (Seattle)FSD1
SuperfamilyQ9BTV5
Human Protein AtlasENSG00000105255
Peptide AtlasQ9BTV5
HPRD17021
IPIIPI00305827   IPI00909434   
Protein Interaction databases
DIP (DOE-UCLA)Q9BTV5
IntAct (EBI)Q9BTV5
FunCoupENSG00000105255
BioGRIDFSD1
STRING (EMBL)FSD1
ZODIACFSD1
Ontologies - Pathways
QuickGOQ9BTV5
Ontology : AmiGOnucleus  cytoplasm  microtubule organizing center  microtubule  cell cycle  cleavage furrow  cell division  
Ontology : EGO-EBInucleus  cytoplasm  microtubule organizing center  microtubule  cell cycle  cleavage furrow  cell division  
NDEx NetworkFSD1
Atlas of Cancer Signalling NetworkFSD1
Wikipedia pathwaysFSD1
Orthology - Evolution
OrthoDB79187
GeneTree (enSembl)ENSG00000105255
Phylogenetic Trees/Animal Genes : TreeFamFSD1
HOVERGENQ9BTV5
HOGENOMQ9BTV5
Homologs : HomoloGeneFSD1
Homology/Alignments : Family Browser (UCSC)FSD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFSD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FSD1
dbVarFSD1
ClinVarFSD1
1000_GenomesFSD1 
Exome Variant ServerFSD1
ExAC (Exome Aggregation Consortium)FSD1 (select the gene name)
Genetic variants : HAPMAP79187
Genomic Variants (DGV)FSD1 [DGVbeta]
DECIPHERFSD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFSD1 
Mutations
ICGC Data PortalFSD1 
TCGA Data PortalFSD1 
Broad Tumor PortalFSD1
OASIS PortalFSD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFSD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFSD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FSD1
DgiDB (Drug Gene Interaction Database)FSD1
DoCM (Curated mutations)FSD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FSD1 (select a term)
intoGenFSD1
Cancer3DFSD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609828   
Orphanet
MedgenFSD1
Genetic Testing Registry FSD1
NextProtQ9BTV5 [Medical]
TSGene79187
GENETestsFSD1
Huge Navigator FSD1 [HugePedia]
snp3D : Map Gene to Disease79187
BioCentury BCIQFSD1
ClinGenFSD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79187
Chemical/Pharm GKB GenePA134882882
Clinical trialFSD1
Miscellaneous
canSAR (ICR)FSD1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFSD1
EVEXFSD1
GoPubMedFSD1
iHOPFSD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:16:29 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.