Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FSD1L (fibronectin type III and SPRY domain containing 1-like)

Identity

Alias_namesCSDUFD1
CCDC10
FSD1NL
FSD1CL
cystatin and DUF19 domain containing 1
coiled-coil domain containing 10
fibronectin type III and SPRY domain containing 1-like
Other aliasMIR1
HGNC (Hugo) FSD1L
LocusID (NCBI) 83856
Atlas_Id 63610
Location 9q31.2  [Link to chromosome band 9q31]
Location_base_pair Starts at 108210315 and ends at 108314714 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FSD1L (9q31.2) / ADAMTS13 (9q34.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FSD1L   13753
Cards
Entrez_Gene (NCBI)FSD1L  83856  fibronectin type III and SPRY domain containing 1-like
AliasesCCDC10; CSDUFD1; FSD1CL; FSD1NL; 
MIR1
GeneCards (Weizmann)FSD1L
Ensembl hg19 (Hinxton)ENSG00000106701 [Gene_View]  chr9:108210315-108314714 [Contig_View]  FSD1L [Vega]
Ensembl hg38 (Hinxton)ENSG00000106701 [Gene_View]  chr9:108210315-108314714 [Contig_View]  FSD1L [Vega]
ICGC DataPortalENSG00000106701
TCGA cBioPortalFSD1L
AceView (NCBI)FSD1L
Genatlas (Paris)FSD1L
WikiGenes83856
SOURCE (Princeton)FSD1L
Genetics Home Reference (NIH)FSD1L
Genomic and cartography
GoldenPath hg19 (UCSC)FSD1L  -     chr9:108210315-108314714 +  9q31.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FSD1L  -     9q31.2   [Description]    (hg38-Dec_2013)
EnsemblFSD1L - 9q31.2 [CytoView hg19]  FSD1L - 9q31.2 [CytoView hg38]
Mapping of homologs : NCBIFSD1L [Mapview hg19]  FSD1L [Mapview hg38]
OMIM609829   
Gene and transcription
Genbank (Entrez)AF088031 AF316830 AK296433 AK299350 AK299491
RefSeq transcript (Entrez)NM_001145313 NM_001287191 NM_001287192 NM_031919 NM_207647
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)FSD1L
Cluster EST : UnigeneHs.136901 [ NCBI ]
CGAP (NCI)Hs.136901
Alternative Splicing GalleryENSG00000106701
Gene ExpressionFSD1L [ NCBI-GEO ]   FSD1L [ EBI - ARRAY_EXPRESS ]   FSD1L [ SEEK ]   FSD1L [ MEM ]
Gene Expression Viewer (FireBrowse)FSD1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83856
GTEX Portal (Tissue expression)FSD1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXM9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXM9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXM9
Splice isoforms : SwissVarQ9BXM9
PhosPhoSitePlusQ9BXM9
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    COS (PS51262)    FN3 (PS50853)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    COS_domain    FN3_dom    Ig-like_fold    SPRY_dom   
Domain families : Pfam (Sanger)fn3 (PF00041)    SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam00041    pfam00622   
Domain families : Smart (EMBL)FN3 (SM00060)  
Conserved Domain (NCBI)FSD1L
DMDM Disease mutations83856
Blocks (Seattle)FSD1L
SuperfamilyQ9BXM9
Human Protein AtlasENSG00000106701
Peptide AtlasQ9BXM9
HPRD14641
IPIIPI00921807   IPI00513845   IPI00011117   IPI00181727   IPI00945670   IPI00946139   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXM9
IntAct (EBI)Q9BXM9
FunCoupENSG00000106701
BioGRIDFSD1L
STRING (EMBL)FSD1L
ZODIACFSD1L
Ontologies - Pathways
QuickGOQ9BXM9
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkFSD1L
Atlas of Cancer Signalling NetworkFSD1L
Wikipedia pathwaysFSD1L
Orthology - Evolution
OrthoDB83856
GeneTree (enSembl)ENSG00000106701
Phylogenetic Trees/Animal Genes : TreeFamFSD1L
HOVERGENQ9BXM9
HOGENOMQ9BXM9
Homologs : HomoloGeneFSD1L
Homology/Alignments : Family Browser (UCSC)FSD1L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFSD1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FSD1L
dbVarFSD1L
ClinVarFSD1L
1000_GenomesFSD1L 
Exome Variant ServerFSD1L
ExAC (Exome Aggregation Consortium)FSD1L (select the gene name)
Genetic variants : HAPMAP83856
Genomic Variants (DGV)FSD1L [DGVbeta]
DECIPHER (Syndromes)9:108210315-108314714  ENSG00000106701
CONAN: Copy Number AnalysisFSD1L 
Mutations
ICGC Data PortalFSD1L 
TCGA Data PortalFSD1L 
Broad Tumor PortalFSD1L
OASIS PortalFSD1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFSD1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFSD1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FSD1L
DgiDB (Drug Gene Interaction Database)FSD1L
DoCM (Curated mutations)FSD1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FSD1L (select a term)
intoGenFSD1L
Cancer3DFSD1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609829   
Orphanet
MedgenFSD1L
Genetic Testing Registry FSD1L
NextProtQ9BXM9 [Medical]
TSGene83856
GENETestsFSD1L
Huge Navigator FSD1L [HugePedia]
snp3D : Map Gene to Disease83856
BioCentury BCIQFSD1L
ClinGenFSD1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83856
Chemical/Pharm GKB GenePA26931
Clinical trialFSD1L
Miscellaneous
canSAR (ICR)FSD1L (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFSD1L
EVEXFSD1L
GoPubMedFSD1L
iHOPFSD1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:05:30 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.