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FSD2 (fibronectin type III and SPRY domain containing 2)

Identity

Alias_namesSPRYD1
SPRY domain containing 1
Alias_symbol (synonym)RP11-127F21
Other alias
HGNC (Hugo) FSD2
LocusID (NCBI) 123722
Atlas_Id 63611
Location 15q25.2  [Link to chromosome band 15q25]
Location_base_pair Starts at 82755365 and ends at 82806070 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FSD2   18024
Cards
Entrez_Gene (NCBI)FSD2  123722  fibronectin type III and SPRY domain containing 2
AliasesSPRYD1
GeneCards (Weizmann)FSD2
Ensembl hg19 (Hinxton)ENSG00000186628 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186628 [Gene_View]  chr15:82755365-82806070 [Contig_View]  FSD2 [Vega]
ICGC DataPortalENSG00000186628
TCGA cBioPortalFSD2
AceView (NCBI)FSD2
Genatlas (Paris)FSD2
WikiGenes123722
SOURCE (Princeton)FSD2
Genetics Home Reference (NIH)FSD2
Genomic and cartography
GoldenPath hg38 (UCSC)FSD2  -     chr15:82755365-82806070 -  15q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FSD2  -     15q25.2   [Description]    (hg19-Feb_2009)
EnsemblFSD2 - 15q25.2 [CytoView hg19]  FSD2 - 15q25.2 [CytoView hg38]
Mapping of homologs : NCBIFSD2 [Mapview hg19]  FSD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK122875 AL833295 BC130569 BC144175 BC144181
RefSeq transcript (Entrez)NM_001007122 NM_001281805 NM_001281806
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FSD2
Cluster EST : UnigeneHs.719372 [ NCBI ]
CGAP (NCI)Hs.719372
Alternative Splicing GalleryENSG00000186628
Gene ExpressionFSD2 [ NCBI-GEO ]   FSD2 [ EBI - ARRAY_EXPRESS ]   FSD2 [ SEEK ]   FSD2 [ MEM ]
Gene Expression Viewer (FireBrowse)FSD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)123722
GTEX Portal (Tissue expression)FSD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtA1L4K1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA1L4K1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA1L4K1
Splice isoforms : SwissVarA1L4K1
PhosPhoSitePlusA1L4K1
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    FN3 (PS50853)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    FN3_dom    Ig-like_fold    SPRY_dom   
Domain families : Pfam (Sanger)fn3 (PF00041)    SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam00041    pfam00622   
Domain families : Smart (EMBL)FN3 (SM00060)  SPRY (SM00449)  
Conserved Domain (NCBI)FSD2
DMDM Disease mutations123722
Blocks (Seattle)FSD2
SuperfamilyA1L4K1
Human Protein AtlasENSG00000186628
Peptide AtlasA1L4K1
HPRD17291
IPIIPI00175833   IPI00922471   
Protein Interaction databases
DIP (DOE-UCLA)A1L4K1
IntAct (EBI)A1L4K1
FunCoupENSG00000186628
BioGRIDFSD2
STRING (EMBL)FSD2
ZODIACFSD2
Ontologies - Pathways
QuickGOA1L4K1
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkFSD2
Atlas of Cancer Signalling NetworkFSD2
Wikipedia pathwaysFSD2
Orthology - Evolution
OrthoDB123722
GeneTree (enSembl)ENSG00000186628
Phylogenetic Trees/Animal Genes : TreeFamFSD2
HOVERGENA1L4K1
HOGENOMA1L4K1
Homologs : HomoloGeneFSD2
Homology/Alignments : Family Browser (UCSC)FSD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFSD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FSD2
dbVarFSD2
ClinVarFSD2
1000_GenomesFSD2 
Exome Variant ServerFSD2
ExAC (Exome Aggregation Consortium)FSD2 (select the gene name)
Genetic variants : HAPMAP123722
Genomic Variants (DGV)FSD2 [DGVbeta]
DECIPHERFSD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFSD2 
Mutations
ICGC Data PortalFSD2 
TCGA Data PortalFSD2 
Broad Tumor PortalFSD2
OASIS PortalFSD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFSD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFSD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FSD2
DgiDB (Drug Gene Interaction Database)FSD2
DoCM (Curated mutations)FSD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FSD2 (select a term)
intoGenFSD2
Cancer3DFSD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFSD2
Genetic Testing Registry FSD2
NextProtA1L4K1 [Medical]
TSGene123722
GENETestsFSD2
Target ValidationFSD2
Huge Navigator FSD2 [HugePedia]
snp3D : Map Gene to Disease123722
BioCentury BCIQFSD2
ClinGenFSD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD123722
Chemical/Pharm GKB GenePA38279
Clinical trialFSD2
Miscellaneous
canSAR (ICR)FSD2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFSD2
EVEXFSD2
GoPubMedFSD2
iHOPFSD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:49:59 CEST 2017

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