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FSIP1 (fibrous sheath interacting protein 1)

Identity

Alias_symbol (synonym)FLJ35989
Other aliasHSD10
HGNC (Hugo) FSIP1
LocusID (NCBI) 161835
Atlas_Id 53844
Location 15q14  [Link to chromosome band 15q14]
Location_base_pair Starts at 39600031 and ends at 39782838 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EHD4 (15q15.1) / FSIP1 (15q14)FSIP1 (15q14) / FSIP1 (15q14)EHD4 15q15.1 / FSIP1 15q14

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FSIP1   21674
Cards
Entrez_Gene (NCBI)FSIP1  161835  fibrous sheath interacting protein 1
AliasesHSD10
GeneCards (Weizmann)FSIP1
Ensembl hg19 (Hinxton)ENSG00000150667 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000150667 [Gene_View]  chr15:39600031-39782838 [Contig_View]  FSIP1 [Vega]
ICGC DataPortalENSG00000150667
TCGA cBioPortalFSIP1
AceView (NCBI)FSIP1
Genatlas (Paris)FSIP1
WikiGenes161835
SOURCE (Princeton)FSIP1
Genetics Home Reference (NIH)FSIP1
Genomic and cartography
GoldenPath hg38 (UCSC)FSIP1  -     chr15:39600031-39782838 -  15q14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FSIP1  -     15q14   [Description]    (hg19-Feb_2009)
EnsemblFSIP1 - 15q14 [CytoView hg19]  FSIP1 - 15q14 [CytoView hg38]
Mapping of homologs : NCBIFSIP1 [Mapview hg19]  FSIP1 [Mapview hg38]
OMIM615795   
Gene and transcription
Genbank (Entrez)AK093308 AY260140 BC045191 BX642685 JF432794
RefSeq transcript (Entrez)NM_001324338 NM_152597
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FSIP1
Cluster EST : UnigeneHs.129598 [ NCBI ]
CGAP (NCI)Hs.129598
Alternative Splicing GalleryENSG00000150667
Gene ExpressionFSIP1 [ NCBI-GEO ]   FSIP1 [ EBI - ARRAY_EXPRESS ]   FSIP1 [ SEEK ]   FSIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)FSIP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)161835
GTEX Portal (Tissue expression)FSIP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NA03   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NA03  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NA03
Splice isoforms : SwissVarQ8NA03
PhosPhoSitePlusQ8NA03
Domains : Interpro (EBI)Fsip1   
Domain families : Pfam (Sanger)FSIP1 (PF15554)   
Domain families : Pfam (NCBI)pfam15554   
Conserved Domain (NCBI)FSIP1
DMDM Disease mutations161835
Blocks (Seattle)FSIP1
SuperfamilyQ8NA03
Human Protein AtlasENSG00000150667
Peptide AtlasQ8NA03
HPRD08201
IPIIPI00167881   
Protein Interaction databases
DIP (DOE-UCLA)Q8NA03
IntAct (EBI)Q8NA03
FunCoupENSG00000150667
BioGRIDFSIP1
STRING (EMBL)FSIP1
ZODIACFSIP1
Ontologies - Pathways
QuickGOQ8NA03
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFSIP1
Atlas of Cancer Signalling NetworkFSIP1
Wikipedia pathwaysFSIP1
Orthology - Evolution
OrthoDB161835
GeneTree (enSembl)ENSG00000150667
Phylogenetic Trees/Animal Genes : TreeFamFSIP1
HOVERGENQ8NA03
HOGENOMQ8NA03
Homologs : HomoloGeneFSIP1
Homology/Alignments : Family Browser (UCSC)FSIP1
Gene fusions - Rearrangements
Fusion : MitelmanEHD4/FSIP1 [15q15.1/15q14]  [t(15;15)(q14;q15)]  
Fusion: TCGAEHD4 15q15.1 FSIP1 15q14 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFSIP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FSIP1
dbVarFSIP1
ClinVarFSIP1
1000_GenomesFSIP1 
Exome Variant ServerFSIP1
ExAC (Exome Aggregation Consortium)FSIP1 (select the gene name)
Genetic variants : HAPMAP161835
Genomic Variants (DGV)FSIP1 [DGVbeta]
DECIPHERFSIP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFSIP1 
Mutations
ICGC Data PortalFSIP1 
TCGA Data PortalFSIP1 
Broad Tumor PortalFSIP1
OASIS PortalFSIP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFSIP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFSIP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FSIP1
DgiDB (Drug Gene Interaction Database)FSIP1
DoCM (Curated mutations)FSIP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FSIP1 (select a term)
intoGenFSIP1
Cancer3DFSIP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615795   
Orphanet
MedgenFSIP1
Genetic Testing Registry FSIP1
NextProtQ8NA03 [Medical]
TSGene161835
GENETestsFSIP1
Target ValidationFSIP1
Huge Navigator FSIP1 [HugePedia]
snp3D : Map Gene to Disease161835
BioCentury BCIQFSIP1
ClinGenFSIP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD161835
Chemical/Pharm GKB GenePA142671750
Clinical trialFSIP1
Miscellaneous
canSAR (ICR)FSIP1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFSIP1
EVEXFSIP1
GoPubMedFSIP1
iHOPFSIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:01:33 CEST 2017

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