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FSIP2 (fibrous sheath interacting protein 2)

Identity

Alias_symbol (synonym)FLJ34780
Other alias-
HGNC (Hugo) FSIP2
LocusID (NCBI) 401024
Atlas_Id 63612
Location 2q32.1  [Link to chromosome band 2q32]
Location_base_pair Starts at 185738895 and ends at 185833289 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GULP1 (2q32.1) / FSIP2 (2q32.1)PCCA (13q32.3) / FSIP2 (2q32.1)RBM17 (10p15.1) / FSIP2 (2q32.1)
GULP1 FSIP2PCCA FSIP2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FSIP2   21675
Cards
Entrez_Gene (NCBI)FSIP2  401024  fibrous sheath interacting protein 2
Aliases
GeneCards (Weizmann)FSIP2
Ensembl hg19 (Hinxton)ENSG00000188738 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188738 [Gene_View]  chr2:185738895-185833289 [Contig_View]  FSIP2 [Vega]
ICGC DataPortalENSG00000188738
TCGA cBioPortalFSIP2
AceView (NCBI)FSIP2
Genatlas (Paris)FSIP2
WikiGenes401024
SOURCE (Princeton)FSIP2
Genetics Home Reference (NIH)FSIP2
Genomic and cartography
GoldenPath hg38 (UCSC)FSIP2  -     chr2:185738895-185833289 +  2q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FSIP2  -     2q32.1   [Description]    (hg19-Feb_2009)
EnsemblFSIP2 - 2q32.1 [CytoView hg19]  FSIP2 - 2q32.1 [CytoView hg38]
Mapping of homologs : NCBIFSIP2 [Mapview hg19]  FSIP2 [Mapview hg38]
OMIM615796   
Gene and transcription
Genbank (Entrez)AK092099 AK126036 AK126051 AK126089 AK126104
RefSeq transcript (Entrez)NM_173651 NM_207482
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FSIP2
Cluster EST : UnigeneHs.98025 [ NCBI ]
CGAP (NCI)Hs.98025
Alternative Splicing GalleryENSG00000188738
Gene ExpressionFSIP2 [ NCBI-GEO ]   FSIP2 [ EBI - ARRAY_EXPRESS ]   FSIP2 [ SEEK ]   FSIP2 [ MEM ]
Gene Expression Viewer (FireBrowse)FSIP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401024
GTEX Portal (Tissue expression)FSIP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5CZC0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5CZC0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5CZC0
Splice isoforms : SwissVarQ5CZC0
PhosPhoSitePlusQ5CZC0
Domains : Interpro (EBI)FSIP2_C   
Domain families : Pfam (Sanger)FSIP2 (PF15783)   
Domain families : Pfam (NCBI)pfam15783   
Conserved Domain (NCBI)FSIP2
DMDM Disease mutations401024
Blocks (Seattle)FSIP2
SuperfamilyQ5CZC0
Human Protein AtlasENSG00000188738
Peptide AtlasQ5CZC0
HPRD13483
IPIIPI00890750   IPI00973378   IPI00878236   IPI00552057   
Protein Interaction databases
DIP (DOE-UCLA)Q5CZC0
IntAct (EBI)Q5CZC0
FunCoupENSG00000188738
BioGRIDFSIP2
STRING (EMBL)FSIP2
ZODIACFSIP2
Ontologies - Pathways
QuickGOQ5CZC0
Ontology : AmiGOmitochondrion  
Ontology : EGO-EBImitochondrion  
NDEx NetworkFSIP2
Atlas of Cancer Signalling NetworkFSIP2
Wikipedia pathwaysFSIP2
Orthology - Evolution
OrthoDB401024
GeneTree (enSembl)ENSG00000188738
Phylogenetic Trees/Animal Genes : TreeFamFSIP2
HOVERGENQ5CZC0
HOGENOMQ5CZC0
Homologs : HomoloGeneFSIP2
Homology/Alignments : Family Browser (UCSC)FSIP2
Gene fusions - Rearrangements
Fusion: TCGAGULP1 FSIP2
Fusion: TCGAPCCA FSIP2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFSIP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FSIP2
dbVarFSIP2
ClinVarFSIP2
1000_GenomesFSIP2 
Exome Variant ServerFSIP2
ExAC (Exome Aggregation Consortium)FSIP2 (select the gene name)
Genetic variants : HAPMAP401024
Genomic Variants (DGV)FSIP2 [DGVbeta]
DECIPHERFSIP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFSIP2 
Mutations
ICGC Data PortalFSIP2 
TCGA Data PortalFSIP2 
Broad Tumor PortalFSIP2
OASIS PortalFSIP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFSIP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFSIP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch FSIP2
DgiDB (Drug Gene Interaction Database)FSIP2
DoCM (Curated mutations)FSIP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FSIP2 (select a term)
intoGenFSIP2
Cancer3DFSIP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615796   
Orphanet
MedgenFSIP2
Genetic Testing Registry FSIP2
NextProtQ5CZC0 [Medical]
TSGene401024
GENETestsFSIP2
Target ValidationFSIP2
Huge Navigator FSIP2 [HugePedia]
snp3D : Map Gene to Disease401024
BioCentury BCIQFSIP2
ClinGenFSIP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401024
Chemical/Pharm GKB GenePA134991479
Clinical trialFSIP2
Miscellaneous
canSAR (ICR)FSIP2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFSIP2
EVEXFSIP2
GoPubMedFSIP2
iHOPFSIP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:08:59 CEST 2017

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