Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FSTL5 (follistatin like 5)

Identity

Alias_namesfollistatin-like 5
Alias_symbol (synonym)DKFZp566D234
KIAA1263
Other alias-
HGNC (Hugo) FSTL5
LocusID (NCBI) 56884
Atlas_Id 55675
Location 4q32.2  [Link to chromosome band 4q32]
Location_base_pair Starts at 161383892 and ends at 162164034 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FSTL5 (4q32.2) / MRPL21 (11q13.3)FSTL5 (4q32.2) / NFYC (1p34.2)FSTL5 (4q32.2) / PLEKHA7 (11p15.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FSTL5   21386
Cards
Entrez_Gene (NCBI)FSTL5  56884  follistatin like 5
Aliases
GeneCards (Weizmann)FSTL5
Ensembl hg19 (Hinxton)ENSG00000168843 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168843 [Gene_View]  chr4:161383892-162164034 [Contig_View]  FSTL5 [Vega]
ICGC DataPortalENSG00000168843
TCGA cBioPortalFSTL5
AceView (NCBI)FSTL5
Genatlas (Paris)FSTL5
WikiGenes56884
SOURCE (Princeton)FSTL5
Genetics Home Reference (NIH)FSTL5
Genomic and cartography
GoldenPath hg38 (UCSC)FSTL5  -     chr4:161383892-162164034 -  4q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FSTL5  -     4q32.2   [Description]    (hg19-Feb_2009)
EnsemblFSTL5 - 4q32.2 [CytoView hg19]  FSTL5 - 4q32.2 [CytoView hg38]
Mapping of homologs : NCBIFSTL5 [Mapview hg19]  FSTL5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA350666 AB033089 AK315152 AL137695 BC036502
RefSeq transcript (Entrez)NM_001128427 NM_001128428 NM_020116
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FSTL5
Cluster EST : UnigeneHs.32452 [ NCBI ]
CGAP (NCI)Hs.32452
Alternative Splicing GalleryENSG00000168843
Gene ExpressionFSTL5 [ NCBI-GEO ]   FSTL5 [ EBI - ARRAY_EXPRESS ]   FSTL5 [ SEEK ]   FSTL5 [ MEM ]
Gene Expression Viewer (FireBrowse)FSTL5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56884
GTEX Portal (Tissue expression)FSTL5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N475   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N475  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N475
Splice isoforms : SwissVarQ8N475
PhosPhoSitePlusQ8N475
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)    IG_LIKE (PS50835)    KAZAL_2 (PS51465)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    Kazal_dom    WD40/YVTN_repeat-like_dom   
Domain families : Pfam (Sanger)Kazal_2 (PF07648)   
Domain families : Pfam (NCBI)pfam07648   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  KAZAL (SM00280)  
Conserved Domain (NCBI)FSTL5
DMDM Disease mutations56884
Blocks (Seattle)FSTL5
SuperfamilyQ8N475
Human Protein AtlasENSG00000168843
Peptide AtlasQ8N475
HPRD10998
IPIIPI00008087   IPI00896559   IPI00896533   
Protein Interaction databases
DIP (DOE-UCLA)Q8N475
IntAct (EBI)Q8N475
FunCoupENSG00000168843
BioGRIDFSTL5
STRING (EMBL)FSTL5
ZODIACFSTL5
Ontologies - Pathways
QuickGOQ8N475
Ontology : AmiGOcalcium ion binding  protein binding  extracellular region  
Ontology : EGO-EBIcalcium ion binding  protein binding  extracellular region  
NDEx NetworkFSTL5
Atlas of Cancer Signalling NetworkFSTL5
Wikipedia pathwaysFSTL5
Orthology - Evolution
OrthoDB56884
GeneTree (enSembl)ENSG00000168843
Phylogenetic Trees/Animal Genes : TreeFamFSTL5
HOVERGENQ8N475
HOGENOMQ8N475
Homologs : HomoloGeneFSTL5
Homology/Alignments : Family Browser (UCSC)FSTL5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFSTL5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FSTL5
dbVarFSTL5
ClinVarFSTL5
1000_GenomesFSTL5 
Exome Variant ServerFSTL5
ExAC (Exome Aggregation Consortium)FSTL5 (select the gene name)
Genetic variants : HAPMAP56884
Genomic Variants (DGV)FSTL5 [DGVbeta]
DECIPHERFSTL5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFSTL5 
Mutations
ICGC Data PortalFSTL5 
TCGA Data PortalFSTL5 
Broad Tumor PortalFSTL5
OASIS PortalFSTL5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFSTL5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFSTL5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FSTL5
DgiDB (Drug Gene Interaction Database)FSTL5
DoCM (Curated mutations)FSTL5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FSTL5 (select a term)
intoGenFSTL5
Cancer3DFSTL5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFSTL5
Genetic Testing Registry FSTL5
NextProtQ8N475 [Medical]
TSGene56884
GENETestsFSTL5
Huge Navigator FSTL5 [HugePedia]
snp3D : Map Gene to Disease56884
BioCentury BCIQFSTL5
ClinGenFSTL5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56884
Chemical/Pharm GKB GenePA134978045
Clinical trialFSTL5
Miscellaneous
canSAR (ICR)FSTL5 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFSTL5
EVEXFSTL5
GoPubMedFSTL5
iHOPFSTL5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:16:30 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.