Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FTCDNL1 (formiminotransferase cyclodeaminase N-terminal like)

Identity

Alias_symbol (synonym)FONG
Other alias
HGNC (Hugo) FTCDNL1
LocusID (NCBI) 348751
Atlas_Id 63616
Location 2q33.1  [Link to chromosome band 2q33]
Location_base_pair Starts at 200625259 and ends at 200715896 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FTCDNL1   48661
Cards
Entrez_Gene (NCBI)FTCDNL1  348751  formiminotransferase cyclodeaminase N-terminal like
AliasesFONG
GeneCards (Weizmann)FTCDNL1
Ensembl hg19 (Hinxton)ENSG00000226124 [Gene_View]  chr2:200625259-200715896 [Contig_View]  FTCDNL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000226124 [Gene_View]  chr2:200625259-200715896 [Contig_View]  FTCDNL1 [Vega]
ICGC DataPortalENSG00000226124
TCGA cBioPortalFTCDNL1
AceView (NCBI)FTCDNL1
Genatlas (Paris)FTCDNL1
WikiGenes348751
SOURCE (Princeton)FTCDNL1
Genetics Home Reference (NIH)FTCDNL1
Genomic and cartography
GoldenPath hg19 (UCSC)FTCDNL1  -     chr2:200625259-200715896 -  2q33.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FTCDNL1  -     2q33.1   [Description]    (hg38-Dec_2013)
EnsemblFTCDNL1 - 2q33.1 [CytoView hg19]  FTCDNL1 - 2q33.1 [CytoView hg38]
Mapping of homologs : NCBIFTCDNL1 [Mapview hg19]  FTCDNL1 [Mapview hg38]
OMIM614308   
Gene and transcription
Genbank (Entrez)AB568489 BC039445 BF431605
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)FTCDNL1
Cluster EST : UnigeneHs.734578 [ NCBI ]
CGAP (NCI)Hs.734578
Alternative Splicing GalleryENSG00000226124
Gene ExpressionFTCDNL1 [ NCBI-GEO ]   FTCDNL1 [ EBI - ARRAY_EXPRESS ]   FTCDNL1 [ SEEK ]   FTCDNL1 [ MEM ]
Gene Expression Viewer (FireBrowse)FTCDNL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)348751
GTEX Portal (Tissue expression)FTCDNL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtE5RQL4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtE5RQL4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProE5RQL4
Splice isoforms : SwissVarE5RQL4
PhosPhoSitePlusE5RQL4
Domains : Interpro (EBI)Formiminotransferase_N    FormiminoTrfase_subdom   
Domain families : Pfam (Sanger)FTCD_N (PF07837)   
Domain families : Pfam (NCBI)pfam07837   
Conserved Domain (NCBI)FTCDNL1
DMDM Disease mutations348751
Blocks (Seattle)FTCDNL1
SuperfamilyE5RQL4
Human Protein AtlasENSG00000226124
Peptide AtlasE5RQL4
IPIIPI00748504   
Protein Interaction databases
DIP (DOE-UCLA)E5RQL4
IntAct (EBI)E5RQL4
FunCoupENSG00000226124
BioGRIDFTCDNL1
STRING (EMBL)FTCDNL1
ZODIACFTCDNL1
Ontologies - Pathways
QuickGOE5RQL4
Ontology : AmiGOfolic acid binding  metabolic process  transferase activity  
Ontology : EGO-EBIfolic acid binding  metabolic process  transferase activity  
NDEx NetworkFTCDNL1
Atlas of Cancer Signalling NetworkFTCDNL1
Wikipedia pathwaysFTCDNL1
Orthology - Evolution
OrthoDB348751
GeneTree (enSembl)ENSG00000226124
Phylogenetic Trees/Animal Genes : TreeFamFTCDNL1
HOVERGENE5RQL4
HOGENOME5RQL4
Homologs : HomoloGeneFTCDNL1
Homology/Alignments : Family Browser (UCSC)FTCDNL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFTCDNL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FTCDNL1
dbVarFTCDNL1
ClinVarFTCDNL1
1000_GenomesFTCDNL1 
Exome Variant ServerFTCDNL1
ExAC (Exome Aggregation Consortium)FTCDNL1 (select the gene name)
Genetic variants : HAPMAP348751
Genomic Variants (DGV)FTCDNL1 [DGVbeta]
DECIPHER (Syndromes)2:200625259-200715896  ENSG00000226124
CONAN: Copy Number AnalysisFTCDNL1 
Mutations
ICGC Data PortalFTCDNL1 
TCGA Data PortalFTCDNL1 
Broad Tumor PortalFTCDNL1
OASIS PortalFTCDNL1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFTCDNL1
BioMutasearch FTCDNL1
DgiDB (Drug Gene Interaction Database)FTCDNL1
DoCM (Curated mutations)FTCDNL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FTCDNL1 (select a term)
intoGenFTCDNL1
Cancer3DFTCDNL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614308   
Orphanet
MedgenFTCDNL1
Genetic Testing Registry FTCDNL1
NextProtE5RQL4 [Medical]
TSGene348751
GENETestsFTCDNL1
Huge Navigator FTCDNL1 [HugePedia]
snp3D : Map Gene to Disease348751
BioCentury BCIQFTCDNL1
ClinGenFTCDNL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD348751
Clinical trialFTCDNL1
Miscellaneous
canSAR (ICR)FTCDNL1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFTCDNL1
EVEXFTCDNL1
GoPubMedFTCDNL1
iHOPFTCDNL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:05:31 CET 2017

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