Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FTO-IT1 (FTO intronic transcript 1)

Identity

Alias_namesFTO intronic transcript 1 (non-protein coding)
Other alias-
HGNC (Hugo) FTO-IT1
LocusID (NCBI) 100505692
Atlas_Id 63622
Location 16q12.2  [Link to chromosome band 16q12]
Location_base_pair Starts at 54039393 and ends at 54040373 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FTO-IT1   43758
Cards
Entrez_Gene (NCBI)FTO-IT1  100505692  FTO intronic transcript 1
Aliases
GeneCards (Weizmann)FTO-IT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:54039393-54040373 [Contig_View]  FTO-IT1 [Vega]
TCGA cBioPortalFTO-IT1
AceView (NCBI)FTO-IT1
Genatlas (Paris)FTO-IT1
WikiGenes100505692
SOURCE (Princeton)FTO-IT1
Genetics Home Reference (NIH)FTO-IT1
Genomic and cartography
GoldenPath hg38 (UCSC)FTO-IT1  -     chr16:54039393-54040373 +  16q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FTO-IT1  -     16q12.2   [Description]    (hg19-Feb_2009)
EnsemblFTO-IT1 - 16q12.2 [CytoView hg19]  FTO-IT1 - 16q12.2 [CytoView hg38]
Mapping of homologs : NCBIFTO-IT1 [Mapview hg19]  FTO-IT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)CA450585
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FTO-IT1
Cluster EST : UnigeneHs.664629 [ NCBI ]
CGAP (NCI)Hs.664629
Gene ExpressionFTO-IT1 [ NCBI-GEO ]   FTO-IT1 [ EBI - ARRAY_EXPRESS ]   FTO-IT1 [ SEEK ]   FTO-IT1 [ MEM ]
Gene Expression Viewer (FireBrowse)FTO-IT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100505692
GTEX Portal (Tissue expression)FTO-IT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FTO-IT1
DMDM Disease mutations100505692
Blocks (Seattle)FTO-IT1
Protein Interaction databases
BioGRIDFTO-IT1
STRING (EMBL)FTO-IT1
ZODIACFTO-IT1
Ontologies - Pathways
Huge Navigator FTO-IT1 [HugePedia]
snp3D : Map Gene to Disease100505692
BioCentury BCIQFTO-IT1
ClinGenFTO-IT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505692
Clinical trialFTO-IT1
Miscellaneous
canSAR (ICR)FTO-IT1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFTO-IT1
EVEXFTO-IT1
GoPubMedFTO-IT1
iHOPFTO-IT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:09:00 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.