Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FTSJ1 (FtsJ RNA methyltransferase homolog 1 (E. coli))

Identity

Alias_namesMRX9
MRX44
mental retardation, X-linked 9
mental retardation, X-linked 44
Alias_symbol (synonym)JM23
CDLIV
SPB1
TRM7
TRMT7
Other alias
HGNC (Hugo) FTSJ1
LocusID (NCBI) 24140
Atlas_Id 63623
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 48476021 and ends at 48486364 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SEPN1 (1p36.11) / FTSJ1 (Xp11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FTSJ1   13254
Cards
Entrez_Gene (NCBI)FTSJ1  24140  FtsJ RNA methyltransferase homolog 1 (E. coli)
AliasesCDLIV; JM23; MRX44; MRX9; 
SPB1; TRMT7
GeneCards (Weizmann)FTSJ1
Ensembl hg19 (Hinxton)ENSG00000068438 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000068438 [Gene_View]  chrX:48476021-48486364 [Contig_View]  FTSJ1 [Vega]
ICGC DataPortalENSG00000068438
TCGA cBioPortalFTSJ1
AceView (NCBI)FTSJ1
Genatlas (Paris)FTSJ1
WikiGenes24140
SOURCE (Princeton)FTSJ1
Genetics Home Reference (NIH)FTSJ1
Genomic and cartography
GoldenPath hg38 (UCSC)FTSJ1  -     chrX:48476021-48486364 +  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FTSJ1  -     Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblFTSJ1 - Xp11.23 [CytoView hg19]  FTSJ1 - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBIFTSJ1 [Mapview hg19]  FTSJ1 [Mapview hg38]
OMIM300499   309549   
Gene and transcription
Genbank (Entrez)AF063015 AJ005892 AK024023 AK297486 AK315138
RefSeq transcript (Entrez)NM_001282157 NM_012280 NM_177439
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FTSJ1
Cluster EST : UnigeneHs.23170 [ NCBI ]
CGAP (NCI)Hs.23170
Alternative Splicing GalleryENSG00000068438
Gene ExpressionFTSJ1 [ NCBI-GEO ]   FTSJ1 [ EBI - ARRAY_EXPRESS ]   FTSJ1 [ SEEK ]   FTSJ1 [ MEM ]
Gene Expression Viewer (FireBrowse)FTSJ1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)24140
GTEX Portal (Tissue expression)FTSJ1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UET6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UET6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UET6
Splice isoforms : SwissVarQ9UET6
PhosPhoSitePlusQ9UET6
Domains : Interpro (EBI)RNA_methyltr_E_Trm7    rRNA-MeTfrase_E    rRNA_MeTrfase_FtsJ_dom    SAM-dependent_MTases   
Domain families : Pfam (Sanger)FtsJ (PF01728)   
Domain families : Pfam (NCBI)pfam01728   
Conserved Domain (NCBI)FTSJ1
DMDM Disease mutations24140
Blocks (Seattle)FTSJ1
SuperfamilyQ9UET6
Human Protein AtlasENSG00000068438
Peptide AtlasQ9UET6
HPRD06568
IPIIPI00004308   IPI00219764   IPI01009290   
Protein Interaction databases
DIP (DOE-UCLA)Q9UET6
IntAct (EBI)Q9UET6
FunCoupENSG00000068438
BioGRIDFTSJ1
STRING (EMBL)FTSJ1
ZODIACFTSJ1
Ontologies - Pathways
QuickGOQ9UET6
Ontology : AmiGOcytosol  tRNA modification  tRNA (guanosine-2'-O-)-methyltransferase activity  tRNA methylation  tRNA (cytosine-2'-O-)-methyltransferase activity  
Ontology : EGO-EBIcytosol  tRNA modification  tRNA (guanosine-2'-O-)-methyltransferase activity  tRNA methylation  tRNA (cytosine-2'-O-)-methyltransferase activity  
NDEx NetworkFTSJ1
Atlas of Cancer Signalling NetworkFTSJ1
Wikipedia pathwaysFTSJ1
Orthology - Evolution
OrthoDB24140
GeneTree (enSembl)ENSG00000068438
Phylogenetic Trees/Animal Genes : TreeFamFTSJ1
HOVERGENQ9UET6
HOGENOMQ9UET6
Homologs : HomoloGeneFTSJ1
Homology/Alignments : Family Browser (UCSC)FTSJ1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFTSJ1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FTSJ1
dbVarFTSJ1
ClinVarFTSJ1
1000_GenomesFTSJ1 
Exome Variant ServerFTSJ1
ExAC (Exome Aggregation Consortium)FTSJ1 (select the gene name)
Genetic variants : HAPMAP24140
Genomic Variants (DGV)FTSJ1 [DGVbeta]
DECIPHERFTSJ1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFTSJ1 
Mutations
ICGC Data PortalFTSJ1 
TCGA Data PortalFTSJ1 
Broad Tumor PortalFTSJ1
OASIS PortalFTSJ1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFTSJ1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFTSJ1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch FTSJ1
DgiDB (Drug Gene Interaction Database)FTSJ1
DoCM (Curated mutations)FTSJ1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FTSJ1 (select a term)
intoGenFTSJ1
Cancer3DFTSJ1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300499    309549   
Orphanet3256   
MedgenFTSJ1
Genetic Testing Registry FTSJ1
NextProtQ9UET6 [Medical]
TSGene24140
GENETestsFTSJ1
Target ValidationFTSJ1
Huge Navigator FTSJ1 [HugePedia]
snp3D : Map Gene to Disease24140
BioCentury BCIQFTSJ1
ClinGenFTSJ1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD24140
Chemical/Pharm GKB GenePA28417
Clinical trialFTSJ1
Miscellaneous
canSAR (ICR)FTSJ1 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFTSJ1
EVEXFTSJ1
GoPubMedFTSJ1
iHOPFTSJ1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:00 CEST 2017

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