Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FTSJ1 (FtsJ RNA 2'-O-methyltransferase 1)

Identity

Alias (NCBI)CDLIV
JM23
MRX44
MRX9
SPB1
TRMT7
HGNC (Hugo) FTSJ1
HGNC Alias symbJM23
CDLIV
SPB1
TRM7
TRMT7
HGNC Alias nametRNA methyltransferase 7 homolog (S. cerevisiae)
HGNC Previous nameMRX9
 MRX44
HGNC Previous namemental retardation, X-linked 9
 mental retardation, X-linked 44
LocusID (NCBI) 24140
Atlas_Id 63623
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 48476199 and ends at 48486350 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SEPN1 (1p36.11) / FTSJ1 (Xp11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)FTSJ1   13254
Cards
Entrez_Gene (NCBI)FTSJ1    FtsJ RNA 2'-O-methyltransferase 1
AliasesCDLIV; JM23; MRX44; MRX9; 
SPB1; TRMT7
GeneCards (Weizmann)FTSJ1
Ensembl hg19 (Hinxton)ENSG00000068438 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000068438 [Gene_View]  ENSG00000068438 [Sequence]  chrX:48476199-48486350 [Contig_View]  FTSJ1 [Vega]
ICGC DataPortalENSG00000068438
TCGA cBioPortalFTSJ1
AceView (NCBI)FTSJ1
Genatlas (Paris)FTSJ1
SOURCE (Princeton)FTSJ1
Genetics Home Reference (NIH)FTSJ1
Genomic and cartography
GoldenPath hg38 (UCSC)FTSJ1  -     chrX:48476199-48486350 +  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FTSJ1  -     Xp11.23   [Description]    (hg19-Feb_2009)
GoldenPathFTSJ1 - Xp11.23 [CytoView hg19]  FTSJ1 - Xp11.23 [CytoView hg38]
ImmunoBaseENSG00000068438
Genome Data Viewer NCBIFTSJ1 [Mapview hg19]  
OMIM300499   309549   
Gene and transcription
Genbank (Entrez)AF063015 AJ005892 AK024023 AK297486 AK315138
RefSeq transcript (Entrez)NM_001282157 NM_012280 NM_177439
Consensus coding sequences : CCDS (NCBI)FTSJ1
Gene ExpressionFTSJ1 [ NCBI-GEO ]   FTSJ1 [ EBI - ARRAY_EXPRESS ]   FTSJ1 [ SEEK ]   FTSJ1 [ MEM ]
Gene Expression Viewer (FireBrowse)FTSJ1 [ Firebrowse - Broad ]
GenevisibleExpression of FTSJ1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)24140
GTEX Portal (Tissue expression)FTSJ1
Human Protein AtlasENSG00000068438-FTSJ1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UET6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UET6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UET6
PhosPhoSitePlusQ9UET6
Domains : Interpro (EBI)RNA_methyltr_E_Trm7    rRNA-MeTfrase_E    rRNA_MeTrfase_FtsJ_dom    SAM-dependent_MTases   
Domain families : Pfam (Sanger)FtsJ (PF01728)   
Domain families : Pfam (NCBI)pfam01728   
Conserved Domain (NCBI)FTSJ1
SuperfamilyQ9UET6
AlphaFold pdb e-kbQ9UET6   
Human Protein Atlas [tissue]ENSG00000068438-FTSJ1 [tissue]
HPRD06568
Protein Interaction databases
DIP (DOE-UCLA)Q9UET6
IntAct (EBI)Q9UET6
BioGRIDFTSJ1
STRING (EMBL)FTSJ1
ZODIACFTSJ1
Ontologies - Pathways
QuickGOQ9UET6
Ontology : AmiGORNA methylation  tRNA nucleoside ribose methylation  cytoplasmic translation  protein binding  cytoplasm  cytosol  tRNA modification  RNA methyltransferase activity  tRNA methyltransferase activity  tRNA (guanosine-2'-O-)-methyltransferase activity  tRNA methylation  tRNA (cytosine-2'-O-)-methyltransferase activity  
Ontology : EGO-EBIRNA methylation  tRNA nucleoside ribose methylation  cytoplasmic translation  protein binding  cytoplasm  cytosol  tRNA modification  RNA methyltransferase activity  tRNA methyltransferase activity  tRNA (guanosine-2'-O-)-methyltransferase activity  tRNA methylation  tRNA (cytosine-2'-O-)-methyltransferase activity  
NDEx NetworkFTSJ1
Atlas of Cancer Signalling NetworkFTSJ1
Wikipedia pathwaysFTSJ1
Orthology - Evolution
OrthoDB24140
GeneTree (enSembl)ENSG00000068438
Phylogenetic Trees/Animal Genes : TreeFamFTSJ1
Homologs : HomoloGeneFTSJ1
Homology/Alignments : Family Browser (UCSC)FTSJ1
Gene fusions - Rearrangements
Fusion : QuiverFTSJ1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFTSJ1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FTSJ1
dbVarFTSJ1
ClinVarFTSJ1
MonarchFTSJ1
1000_GenomesFTSJ1 
Exome Variant ServerFTSJ1
GNOMAD BrowserENSG00000068438
Varsome BrowserFTSJ1
ACMGFTSJ1 variants
VarityQ9UET6
Genomic Variants (DGV)FTSJ1 [DGVbeta]
DECIPHERFTSJ1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFTSJ1 
Mutations
ICGC Data PortalFTSJ1 
TCGA Data PortalFTSJ1 
Broad Tumor PortalFTSJ1
OASIS PortalFTSJ1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFTSJ1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFTSJ1
Mutations and Diseases : HGMDFTSJ1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaFTSJ1
DgiDB (Drug Gene Interaction Database)FTSJ1
DoCM (Curated mutations)FTSJ1
CIViC (Clinical Interpretations of Variants in Cancer)FTSJ1
Cancer3DFTSJ1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300499    309549   
Orphanet3256   
DisGeNETFTSJ1
MedgenFTSJ1
Genetic Testing Registry FTSJ1
NextProtQ9UET6 [Medical]
GENETestsFTSJ1
Target ValidationFTSJ1
Huge Navigator FTSJ1 [HugePedia]
ClinGenFTSJ1
Clinical trials, drugs, therapy
MyCancerGenomeFTSJ1
Protein Interactions : CTDFTSJ1
Pharm GKB GenePA28417
PharosQ9UET6
Clinical trialFTSJ1
Miscellaneous
canSAR (ICR)FTSJ1
HarmonizomeFTSJ1
DataMed IndexFTSJ1
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFTSJ1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:50:59 CEST 2021

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