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FTSJ3 (FtsJ homolog 3)

Identity

Alias_namesFtsJ homolog 3 (E. coli)
Alias_symbol (synonym)SPB1
Other aliasEPCS3
HGNC (Hugo) FTSJ3
LocusID (NCBI) 117246
Atlas_Id 63624
Location 17q23.3  [Link to chromosome band 17q23]
Location_base_pair Starts at 63819433 and ends at 63827671 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CIT (12q24.23) / FTSJ3 (17q23.3)CYP1A1 (15q24.1) / FTSJ3 (17q23.3)FTSJ3 (17q23.3) / SCN4A (17q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FTSJ3   17136
Cards
Entrez_Gene (NCBI)FTSJ3  117246  FtsJ homolog 3
AliasesEPCS3; SPB1
GeneCards (Weizmann)FTSJ3
Ensembl hg19 (Hinxton)ENSG00000108592 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000108592 [Gene_View]  chr17:63819433-63827671 [Contig_View]  FTSJ3 [Vega]
ICGC DataPortalENSG00000108592
TCGA cBioPortalFTSJ3
AceView (NCBI)FTSJ3
Genatlas (Paris)FTSJ3
WikiGenes117246
SOURCE (Princeton)FTSJ3
Genetics Home Reference (NIH)FTSJ3
Genomic and cartography
GoldenPath hg38 (UCSC)FTSJ3  -     chr17:63819433-63827671 -  17q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FTSJ3  -     17q23.3   [Description]    (hg19-Feb_2009)
EnsemblFTSJ3 - 17q23.3 [CytoView hg19]  FTSJ3 - 17q23.3 [CytoView hg38]
Mapping of homologs : NCBIFTSJ3 [Mapview hg19]  FTSJ3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF147378 AF327355 AK000069 AK095861 AK296715
RefSeq transcript (Entrez)NM_017647
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FTSJ3
Cluster EST : UnigeneHs.463785 [ NCBI ]
CGAP (NCI)Hs.463785
Alternative Splicing GalleryENSG00000108592
Gene ExpressionFTSJ3 [ NCBI-GEO ]   FTSJ3 [ EBI - ARRAY_EXPRESS ]   FTSJ3 [ SEEK ]   FTSJ3 [ MEM ]
Gene Expression Viewer (FireBrowse)FTSJ3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)117246
GTEX Portal (Tissue expression)FTSJ3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IY81   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IY81  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IY81
Splice isoforms : SwissVarQ8IY81
PhosPhoSitePlusQ8IY81
Domains : Interpro (EBI)rRNA-MeTfrase_E    rRNA_MeTfrase_Spb1_C    rRNA_MeTfrase_Spb1_DUF3381    rRNA_MeTrfase_FtsJ_dom    SAM-dependent_MTases    Spb1   
Domain families : Pfam (Sanger)DUF3381 (PF11861)    FtsJ (PF01728)    Spb1_C (PF07780)   
Domain families : Pfam (NCBI)pfam11861    pfam01728    pfam07780   
Conserved Domain (NCBI)FTSJ3
DMDM Disease mutations117246
Blocks (Seattle)FTSJ3
SuperfamilyQ8IY81
Human Protein AtlasENSG00000108592
Peptide AtlasQ8IY81
HPRD17024
IPIIPI00217686   
Protein Interaction databases
DIP (DOE-UCLA)Q8IY81
IntAct (EBI)Q8IY81
FunCoupENSG00000108592
BioGRIDFTSJ3
STRING (EMBL)FTSJ3
ZODIACFTSJ3
Ontologies - Pathways
QuickGOQ8IY81
Ontology : AmiGORNA binding  protein binding  nucleus  nucleolus  rRNA methyltransferase activity  rRNA methylation  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  nucleolus  rRNA methyltransferase activity  rRNA methylation  
NDEx NetworkFTSJ3
Atlas of Cancer Signalling NetworkFTSJ3
Wikipedia pathwaysFTSJ3
Orthology - Evolution
OrthoDB117246
GeneTree (enSembl)ENSG00000108592
Phylogenetic Trees/Animal Genes : TreeFamFTSJ3
HOVERGENQ8IY81
HOGENOMQ8IY81
Homologs : HomoloGeneFTSJ3
Homology/Alignments : Family Browser (UCSC)FTSJ3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFTSJ3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FTSJ3
dbVarFTSJ3
ClinVarFTSJ3
1000_GenomesFTSJ3 
Exome Variant ServerFTSJ3
ExAC (Exome Aggregation Consortium)FTSJ3 (select the gene name)
Genetic variants : HAPMAP117246
Genomic Variants (DGV)FTSJ3 [DGVbeta]
DECIPHERFTSJ3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFTSJ3 
Mutations
ICGC Data PortalFTSJ3 
TCGA Data PortalFTSJ3 
Broad Tumor PortalFTSJ3
OASIS PortalFTSJ3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFTSJ3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFTSJ3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FTSJ3
DgiDB (Drug Gene Interaction Database)FTSJ3
DoCM (Curated mutations)FTSJ3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FTSJ3 (select a term)
intoGenFTSJ3
Cancer3DFTSJ3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFTSJ3
Genetic Testing Registry FTSJ3
NextProtQ8IY81 [Medical]
TSGene117246
GENETestsFTSJ3
Target ValidationFTSJ3
Huge Navigator FTSJ3 [HugePedia]
snp3D : Map Gene to Disease117246
BioCentury BCIQFTSJ3
ClinGenFTSJ3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD117246
Chemical/Pharm GKB GenePA28419
Clinical trialFTSJ3
Miscellaneous
canSAR (ICR)FTSJ3 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFTSJ3
EVEXFTSJ3
GoPubMedFTSJ3
iHOPFTSJ3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:01 CEST 2017

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