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FUBP3 (far upstream element binding protein 3)

Identity

Alias (NCBI)FBP3
HGNC (Hugo) FUBP3
HGNC Previous nameFBP3
HGNC Previous namefar upstream element (FUSE) binding protein 3
LocusID (NCBI) 8939
Atlas_Id 51077
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 130579577 and ends at 130638352 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FUBP3 (9q34.11) / FUBP3 (9q34.11)FUBP3 (9q34.11) / HERPUD1 (16q13)FUBP3 (9q34.11) / SERAC1 (6q25.3)
PBK (8p21.1) / FUBP3 (9q34.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)FUBP3   4005
Cards
Entrez_Gene (NCBI)FUBP3    far upstream element binding protein 3
AliasesFBP3
GeneCards (Weizmann)FUBP3
Ensembl hg19 (Hinxton)ENSG00000107164 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000107164 [Gene_View]  ENSG00000107164 [Sequence]  chr9:130579577-130638352 [Contig_View]  FUBP3 [Vega]
ICGC DataPortalENSG00000107164
TCGA cBioPortalFUBP3
AceView (NCBI)FUBP3
Genatlas (Paris)FUBP3
SOURCE (Princeton)FUBP3
Genetics Home Reference (NIH)FUBP3
Genomic and cartography
GoldenPath hg38 (UCSC)FUBP3  -     chr9:130579577-130638352 +  9q34.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FUBP3  -     9q34.11   [Description]    (hg19-Feb_2009)
GoldenPathFUBP3 - 9q34.11 [CytoView hg19]  FUBP3 - 9q34.11 [CytoView hg38]
ImmunoBaseENSG00000107164
genome Data Viewer NCBIFUBP3 [Mapview hg19]  
OMIM603536   
Gene and transcription
Genbank (Entrez)AK057958 AK295155 AL537190 BC001325 BC007874
RefSeq transcript (Entrez)NM_003934
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FUBP3
Alternative Splicing GalleryENSG00000107164
Gene ExpressionFUBP3 [ NCBI-GEO ]   FUBP3 [ EBI - ARRAY_EXPRESS ]   FUBP3 [ SEEK ]   FUBP3 [ MEM ]
Gene Expression Viewer (FireBrowse)FUBP3 [ Firebrowse - Broad ]
GenevisibleExpression of FUBP3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8939
GTEX Portal (Tissue expression)FUBP3
Human Protein AtlasENSG00000107164-FUBP3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96I24   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96I24  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96I24
Splice isoforms : SwissVarQ96I24
PhosPhoSitePlusQ96I24
Domaine pattern : Prosite (Expaxy)KH_TYPE_1 (PS50084)   
Domains : Interpro (EBI)KH_dom    KH_dom_type_1    KH_dom_type_1_sf   
Domain families : Pfam (Sanger)KH_1 (PF00013)   
Domain families : Pfam (NCBI)pfam00013   
Domain families : Smart (EMBL)KH (SM00322)  
Conserved Domain (NCBI)FUBP3
Blocks (Seattle)FUBP3
SuperfamilyQ96I24
Human Protein Atlas [tissue]ENSG00000107164-FUBP3 [tissue]
Peptide AtlasQ96I24
IPIIPI00377261   IPI00063245   
Protein Interaction databases
DIP (DOE-UCLA)Q96I24
IntAct (EBI)Q96I24
BioGRIDFUBP3
STRING (EMBL)FUBP3
ZODIACFUBP3
Ontologies - Pathways
QuickGOQ96I24
Ontology : AmiGOsingle-stranded DNA binding  RNA binding  mRNA binding  protein binding  nucleus  nucleus  nucleus  cytoplasm  cytoplasm  transcription, DNA-templated  regulation of gene expression  positive regulation of gene expression  membrane  positive regulation of transcription, DNA-templated  positive regulation of transcription by RNA polymerase II  
Ontology : EGO-EBIsingle-stranded DNA binding  RNA binding  mRNA binding  protein binding  nucleus  nucleus  nucleus  cytoplasm  cytoplasm  transcription, DNA-templated  regulation of gene expression  positive regulation of gene expression  membrane  positive regulation of transcription, DNA-templated  positive regulation of transcription by RNA polymerase II  
NDEx NetworkFUBP3
Atlas of Cancer Signalling NetworkFUBP3
Wikipedia pathwaysFUBP3
Orthology - Evolution
OrthoDB8939
GeneTree (enSembl)ENSG00000107164
Phylogenetic Trees/Animal Genes : TreeFamFUBP3
HOGENOMQ96I24
Homologs : HomoloGeneFUBP3
Homology/Alignments : Family Browser (UCSC)FUBP3
Gene fusions - Rearrangements
Fusion : QuiverFUBP3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFUBP3 [hg38]
dbVarFUBP3
ClinVarFUBP3
MonarchFUBP3
1000_GenomesFUBP3 
Exome Variant ServerFUBP3
GNOMAD BrowserENSG00000107164
Varsome BrowserFUBP3
Genomic Variants (DGV)FUBP3 [DGVbeta]
DECIPHERFUBP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFUBP3 
Mutations
ICGC Data PortalFUBP3 
TCGA Data PortalFUBP3 
Broad Tumor PortalFUBP3
OASIS PortalFUBP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFUBP3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFUBP3
Mutations and Diseases : HGMDFUBP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FUBP3
DgiDB (Drug Gene Interaction Database)FUBP3
DoCM (Curated mutations)FUBP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FUBP3 (select a term)
intoGenFUBP3
Cancer3DFUBP3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603536   
Orphanet
DisGeNETFUBP3
MedgenFUBP3
Genetic Testing Registry FUBP3
NextProtQ96I24 [Medical]
GENETestsFUBP3
Target ValidationFUBP3
Huge Navigator FUBP3 [HugePedia]
ClinGenFUBP3
Clinical trials, drugs, therapy
MyCancerGenomeFUBP3
Protein Interactions : CTD
Pharm GKB GenePA28421
PharosQ96I24
Clinical trialFUBP3
Miscellaneous
canSAR (ICR)FUBP3 (select the gene name)
HarmonizomeFUBP3
DataMed IndexFUBP3
Probes
Litterature
PubMed93 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFUBP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 25 19:22:14 CET 2021

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