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FUBP3 (far upstream element binding protein 3)

Identity

Alias_namesFBP3
far upstream element (FUSE) binding protein 3
Other alias
HGNC (Hugo) FUBP3
LocusID (NCBI) 8939
Atlas_Id 51077
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 133454960 and ends at 133513739 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FUBP3 (9q34.11) / FUBP3 (9q34.11)FUBP3 (9q34.11) / HERPUD1 (16q13)FUBP3 (9q34.11) / SERAC1 (6q25.3)
PBK (8p21.1) / FUBP3 (9q34.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FUBP3   4005
Cards
Entrez_Gene (NCBI)FUBP3  8939  far upstream element binding protein 3
AliasesFBP3
GeneCards (Weizmann)FUBP3
Ensembl hg19 (Hinxton)ENSG00000107164 [Gene_View]  chr9:133454960-133513739 [Contig_View]  FUBP3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000107164 [Gene_View]  chr9:133454960-133513739 [Contig_View]  FUBP3 [Vega]
ICGC DataPortalENSG00000107164
TCGA cBioPortalFUBP3
AceView (NCBI)FUBP3
Genatlas (Paris)FUBP3
WikiGenes8939
SOURCE (Princeton)FUBP3
Genetics Home Reference (NIH)FUBP3
Genomic and cartography
GoldenPath hg19 (UCSC)FUBP3  -     chr9:133454960-133513739 +  9q34.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FUBP3  -     9q34.11   [Description]    (hg38-Dec_2013)
EnsemblFUBP3 - 9q34.11 [CytoView hg19]  FUBP3 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBIFUBP3 [Mapview hg19]  FUBP3 [Mapview hg38]
OMIM603536   
Gene and transcription
Genbank (Entrez)AK057958 AK295155 AL537190 BC001325 BC007874
RefSeq transcript (Entrez)NM_003934
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929367
Consensus coding sequences : CCDS (NCBI)FUBP3
Cluster EST : UnigeneHs.740088 [ NCBI ]
CGAP (NCI)Hs.740088
Alternative Splicing GalleryENSG00000107164
Gene ExpressionFUBP3 [ NCBI-GEO ]   FUBP3 [ EBI - ARRAY_EXPRESS ]   FUBP3 [ SEEK ]   FUBP3 [ MEM ]
Gene Expression Viewer (FireBrowse)FUBP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8939
GTEX Portal (Tissue expression)FUBP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96I24   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96I24  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96I24
Splice isoforms : SwissVarQ96I24
PhosPhoSitePlusQ96I24
Domaine pattern : Prosite (Expaxy)KH_TYPE_1 (PS50084)   
Domains : Interpro (EBI)KH_dom    KH_dom_type_1   
Domain families : Pfam (Sanger)KH_1 (PF00013)   
Domain families : Pfam (NCBI)pfam00013   
Domain families : Smart (EMBL)KH (SM00322)  
Conserved Domain (NCBI)FUBP3
DMDM Disease mutations8939
Blocks (Seattle)FUBP3
SuperfamilyQ96I24
Human Protein AtlasENSG00000107164
Peptide AtlasQ96I24
IPIIPI00377261   IPI00063245   
Protein Interaction databases
DIP (DOE-UCLA)Q96I24
IntAct (EBI)Q96I24
FunCoupENSG00000107164
BioGRIDFUBP3
STRING (EMBL)FUBP3
ZODIACFUBP3
Ontologies - Pathways
QuickGOQ96I24
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  protein binding  nucleus  nucleus  cytoplasm  transcription, DNA-templated  transcription from RNA polymerase II promoter  positive regulation of gene expression  membrane  poly(A) RNA binding  positive regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  protein binding  nucleus  nucleus  cytoplasm  transcription, DNA-templated  transcription from RNA polymerase II promoter  positive regulation of gene expression  membrane  poly(A) RNA binding  positive regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkFUBP3
Atlas of Cancer Signalling NetworkFUBP3
Wikipedia pathwaysFUBP3
Orthology - Evolution
OrthoDB8939
GeneTree (enSembl)ENSG00000107164
Phylogenetic Trees/Animal Genes : TreeFamFUBP3
HOVERGENQ96I24
HOGENOMQ96I24
Homologs : HomoloGeneFUBP3
Homology/Alignments : Family Browser (UCSC)FUBP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFUBP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FUBP3
dbVarFUBP3
ClinVarFUBP3
1000_GenomesFUBP3 
Exome Variant ServerFUBP3
ExAC (Exome Aggregation Consortium)FUBP3 (select the gene name)
Genetic variants : HAPMAP8939
Genomic Variants (DGV)FUBP3 [DGVbeta]
DECIPHER (Syndromes)9:133454960-133513739  ENSG00000107164
CONAN: Copy Number AnalysisFUBP3 
Mutations
ICGC Data PortalFUBP3 
TCGA Data PortalFUBP3 
Broad Tumor PortalFUBP3
OASIS PortalFUBP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFUBP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFUBP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FUBP3
DgiDB (Drug Gene Interaction Database)FUBP3
DoCM (Curated mutations)FUBP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FUBP3 (select a term)
intoGenFUBP3
Cancer3DFUBP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603536   
Orphanet
MedgenFUBP3
Genetic Testing Registry FUBP3
NextProtQ96I24 [Medical]
TSGene8939
GENETestsFUBP3
Huge Navigator FUBP3 [HugePedia]
snp3D : Map Gene to Disease8939
BioCentury BCIQFUBP3
ClinGenFUBP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8939
Chemical/Pharm GKB GenePA28421
Clinical trialFUBP3
Miscellaneous
canSAR (ICR)FUBP3 (select the gene name)
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFUBP3
EVEXFUBP3
GoPubMedFUBP3
iHOPFUBP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:01:45 CEST 2017

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