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FUCA1 (fucosidase, alpha-L- 1, tissue)

Identity

Other namesFUCA
HGNC (Hugo) FUCA1
LocusID (NCBI) 2517
Location 1p36.11
Location_base_pair Starts at 24171572 and ends at 24194859 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FUCA1   4006
Cards
Entrez_Gene (NCBI)FUCA1  2517  fucosidase, alpha-L- 1, tissue
GeneCards (Weizmann)FUCA1
Ensembl (Hinxton)ENSG00000179163 [Gene_View]  chr1:24171572-24194859 [Contig_View]  FUCA1 [Vega]
ICGC DataPortalENSG00000179163
cBioPortalFUCA1
AceView (NCBI)FUCA1
Genatlas (Paris)FUCA1
WikiGenes2517
SOURCE (Princeton)NM_000147
Genomic and cartography
GoldenPath (UCSC)FUCA1  -  1p36.11   chr1:24171572-24194859 -  1p36.11   [Description]    (hg19-Feb_2009)
EnsemblFUCA1 - 1p36.11 [CytoView]
Mapping of homologs : NCBIFUCA1 [Mapview]
OMIM230000   612280   
Gene and transcription
Genbank (Entrez)AB074175 AK092914 AK095443 AK095455 AK225468
RefSeq transcript (Entrez)NM_000147
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NG_013346 NT_032977 NW_001838573 NW_004929289
Consensus coding sequences : CCDS (NCBI)FUCA1
Cluster EST : UnigeneHs.370858 [ NCBI ]
CGAP (NCI)Hs.370858
Alternative Splicing : Fast-db (Paris)GSHG0001857
Alternative Splicing GalleryENSG00000179163
Gene ExpressionFUCA1 [ NCBI-GEO ]     FUCA1 [ SEEK ]   FUCA1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP04066 (Uniprot)
NextProtP04066  [Medical]
With graphics : InterProP04066
Splice isoforms : SwissVarP04066 (Swissvar)
Catalytic activity : Enzyme3.2.1.51 [ Enzyme-Expasy ]   3.2.1.513.2.1.51 [ IntEnz-EBI ]   3.2.1.51 [ BRENDA ]   3.2.1.51 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)ALPHA_L_FUCOSIDASE (PS00385)   
Domains : Interpro (EBI)FUC_metazoa-typ [organisation]   FUCA1 [organisation]   Glyco_hydro_13_b [organisation]   Glyco_hydro_29 [organisation]   Glyco_hydro_29_CS [organisation]   Glyco_hydro_catalytic_dom [organisation]   Glycoside_hydrolase_SF [organisation]  
Related proteins : CluSTrP04066
Domain families : Pfam (Sanger)Alpha_L_fucos (PF01120)   
Domain families : Pfam (NCBI)pfam01120   
Domain families : Smart (EMBL)Alpha_L_fucos (SM00812)  
DMDM Disease mutations2517
Blocks (Seattle)P04066
Human Protein AtlasENSG00000179163 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP04066
HPRD01974
IPIIPI00843910   IPI00385751   
Protein Interaction databases
DIP (DOE-UCLA)P04066
IntAct (EBI)P04066
FunCoupENSG00000179163
BioGRIDFUCA1
InParanoidP04066
Interologous Interaction database P04066
IntegromeDBFUCA1
STRING (EMBL)FUCA1
Ontologies - Pathways
Ontology : AmiGOalpha-L-fucosidase activity  alpha-L-fucosidase activity  cytoplasm  lysosome  fucose metabolic process  glycosaminoglycan catabolic process  glycoside catabolic process  fucose binding  extracellular vesicular exosome  
Ontology : EGO-EBIalpha-L-fucosidase activity  alpha-L-fucosidase activity  cytoplasm  lysosome  fucose metabolic process  glycosaminoglycan catabolic process  glycoside catabolic process  fucose binding  extracellular vesicular exosome  
Pathways : KEGGOther glycan degradation    Lysosome   
Protein Interaction DatabaseFUCA1
Wikipedia pathwaysFUCA1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)FUCA1
snp3D : Map Gene to Disease2517
SNP (GeneSNP Utah)FUCA1
SNP : HGBaseFUCA1
Genetic variants : HAPMAPFUCA1
Exome VariantFUCA1
1000_GenomesFUCA1 
ICGC programENSG00000179163 
Somatic Mutations in Cancer : COSMICFUCA1 
CONAN: Copy Number AnalysisFUCA1 
Mutations and Diseases : HGMDFUCA1
Mutations and Diseases : intOGenFUCA1
Genomic VariantsFUCA1  FUCA1 [DGVbeta]
dbVarFUCA1
ClinVarFUCA1
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM230000    612280   
MedgenFUCA1
GENETestsFUCA1
Disease Genetic AssociationFUCA1
Huge Navigator FUCA1 [HugePedia]  FUCA1 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneFUCA1
Homology/Alignments : Family Browser (UCSC)FUCA1
Phylogenetic Trees/Animal Genes : TreeFamFUCA1
Chemical/Protein Interactions : CTD2517
Chemical/Pharm GKB GenePA28422
Clinical trialFUCA1
Cancer Resource (Charite)ENSG00000179163
Other databases
Probes
Litterature
PubMed53 Pubmed reference(s) in Entrez
CoreMineFUCA1
iHOPFUCA1
OncoSearchFUCA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 16:47:27 CEST 2014

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