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FUK (fucokinase)

Identity

Alias_symbol (synonym)FLJ39408
Other alias1110046B12Rik
HGNC (Hugo) FUK
LocusID (NCBI) 197258
Atlas_Id 42914
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 70454595 and ends at 70480274 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CBFB (16q22.1) / FUK (16q22.1)FUK (16q22.1) / ABCB5 (7p21.1)FUK (16q22.1) / DNMT3B (20q11.21)
FUK (16q22.1) / PARD3 (10p11.22)FUK 16q22.1 / ABCB5 7p21.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FUK   29500
Cards
Entrez_Gene (NCBI)FUK  197258  fucokinase
Aliases1110046B12Rik
GeneCards (Weizmann)FUK
Ensembl hg19 (Hinxton)ENSG00000157353 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157353 [Gene_View]  chr16:70454595-70480274 [Contig_View]  FUK [Vega]
ICGC DataPortalENSG00000157353
TCGA cBioPortalFUK
AceView (NCBI)FUK
Genatlas (Paris)FUK
WikiGenes197258
SOURCE (Princeton)FUK
Genetics Home Reference (NIH)FUK
Genomic and cartography
GoldenPath hg38 (UCSC)FUK  -     chr16:70454595-70480274 +  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FUK  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblFUK - 16q22.1 [CytoView hg19]  FUK - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBIFUK [Mapview hg19]  FUK [Mapview hg38]
OMIM608675   
Gene and transcription
Genbank (Entrez)AJ441184 AK056456 AK074168 AK092025 AK096727
RefSeq transcript (Entrez)NM_145059
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FUK
Cluster EST : UnigeneHs.7907 [ NCBI ]
CGAP (NCI)Hs.7907
Alternative Splicing GalleryENSG00000157353
Gene ExpressionFUK [ NCBI-GEO ]   FUK [ EBI - ARRAY_EXPRESS ]   FUK [ SEEK ]   FUK [ MEM ]
Gene Expression Viewer (FireBrowse)FUK [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)197258
GTEX Portal (Tissue expression)FUK
Human Protein AtlasENSG00000157353-FUK [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N0W3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N0W3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N0W3
Splice isoforms : SwissVarQ8N0W3
PhosPhoSitePlusQ8N0W3
Domains : Interpro (EBI)Fucokinase    GHMP_kinase_C_dom    GHMP_kinase_N_dom    Mevalonate/galactokinase    Ribosomal_S5_D2-typ_fold    Ribosomal_S5_D2-typ_fold_subgr   
Domain families : Pfam (Sanger)Fucokinase (PF07959)    GHMP_kinases_C (PF08544)    GHMP_kinases_N (PF00288)   
Domain families : Pfam (NCBI)pfam07959    pfam08544    pfam00288   
Conserved Domain (NCBI)FUK
DMDM Disease mutations197258
Blocks (Seattle)FUK
SuperfamilyQ8N0W3
Human Protein Atlas [tissue]ENSG00000157353-FUK [tissue]
Peptide AtlasQ8N0W3
HPRD16365
IPIIPI00418741   IPI00645739   IPI00909923   IPI01014315   IPI00432748   
Protein Interaction databases
DIP (DOE-UCLA)Q8N0W3
IntAct (EBI)Q8N0W3
FunCoupENSG00000157353
BioGRIDFUK
STRING (EMBL)FUK
ZODIACFUK
Ontologies - Pathways
QuickGOQ8N0W3
Ontology : AmiGOATP binding  cytosol  GDP-L-fucose salvage  carbohydrate phosphorylation  fucokinase activity  fucokinase activity  fucokinase activity  
Ontology : EGO-EBIATP binding  cytosol  GDP-L-fucose salvage  carbohydrate phosphorylation  fucokinase activity  fucokinase activity  fucokinase activity  
Pathways : KEGGFructose and mannose metabolism    Amino sugar and nucleotide sugar metabolism   
NDEx NetworkFUK
Atlas of Cancer Signalling NetworkFUK
Wikipedia pathwaysFUK
Orthology - Evolution
OrthoDB197258
GeneTree (enSembl)ENSG00000157353
Phylogenetic Trees/Animal Genes : TreeFamFUK
HOVERGENQ8N0W3
HOGENOMQ8N0W3
Homologs : HomoloGeneFUK
Homology/Alignments : Family Browser (UCSC)FUK
Gene fusions - Rearrangements
Fusion : MitelmanFUK/ABCB5 [16q22.1/7p21.1]  
Fusion: TCGA_MDACCFUK 16q22.1 ABCB5 7p21.1 PRAD
Tumor Fusion PortalFUK
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFUK [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FUK
dbVarFUK
ClinVarFUK
1000_GenomesFUK 
Exome Variant ServerFUK
ExAC (Exome Aggregation Consortium)ENSG00000157353
GNOMAD BrowserENSG00000157353
Genetic variants : HAPMAP197258
Genomic Variants (DGV)FUK [DGVbeta]
DECIPHERFUK [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFUK 
Mutations
ICGC Data PortalFUK 
TCGA Data PortalFUK 
Broad Tumor PortalFUK
OASIS PortalFUK [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFUK  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFUK
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FUK
DgiDB (Drug Gene Interaction Database)FUK
DoCM (Curated mutations)FUK (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FUK (select a term)
intoGenFUK
Cancer3DFUK(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608675   
Orphanet
DisGeNETFUK
MedgenFUK
Genetic Testing Registry FUK
NextProtQ8N0W3 [Medical]
TSGene197258
GENETestsFUK
Target ValidationFUK
Huge Navigator FUK [HugePedia]
snp3D : Map Gene to Disease197258
BioCentury BCIQFUK
ClinGenFUK
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD197258
Chemical/Pharm GKB GenePA134863646
Clinical trialFUK
Miscellaneous
canSAR (ICR)FUK (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFUK
EVEXFUK
GoPubMedFUK
iHOPFUK
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:13:53 CET 2017

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