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FUNDC1 (FUN14 domain containing 1)

Identity

Other alias-
HGNC (Hugo) FUNDC1
LocusID (NCBI) 139341
Atlas_Id 56706
Location Xp11.3  [Link to chromosome band Xp11]
Location_base_pair Starts at 44523639 and ends at 44542975 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FUNDC1   28746
Cards
Entrez_Gene (NCBI)FUNDC1  139341  FUN14 domain containing 1
Aliases
GeneCards (Weizmann)FUNDC1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:44523639-44542975 [Contig_View]  FUNDC1 [Vega]
TCGA cBioPortalFUNDC1
AceView (NCBI)FUNDC1
Genatlas (Paris)FUNDC1
WikiGenes139341
SOURCE (Princeton)FUNDC1
Genetics Home Reference (NIH)FUNDC1
Genomic and cartography
GoldenPath hg38 (UCSC)FUNDC1  -     chrX:44523639-44542975 -  Xp11.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FUNDC1  -     Xp11.3   [Description]    (hg19-Feb_2009)
EnsemblFUNDC1 - Xp11.3 [CytoView hg19]  FUNDC1 - Xp11.3 [CytoView hg38]
Mapping of homologs : NCBIFUNDC1 [Mapview hg19]  FUNDC1 [Mapview hg38]
OMIM300871   
Gene and transcription
Genbank (Entrez)BC035015 BC042813 BG213042 BM837991 JF432781
RefSeq transcript (Entrez)NM_173794
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FUNDC1
Cluster EST : UnigeneHs.7549 [ NCBI ]
CGAP (NCI)Hs.7549
Gene ExpressionFUNDC1 [ NCBI-GEO ]   FUNDC1 [ EBI - ARRAY_EXPRESS ]   FUNDC1 [ SEEK ]   FUNDC1 [ MEM ]
Gene Expression Viewer (FireBrowse)FUNDC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)139341
GTEX Portal (Tissue expression)FUNDC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVP5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVP5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVP5
Splice isoforms : SwissVarQ8IVP5
PhosPhoSitePlusQ8IVP5
Domains : Interpro (EBI)FUN14   
Domain families : Pfam (Sanger)FUN14 (PF04930)   
Domain families : Pfam (NCBI)pfam04930   
Conserved Domain (NCBI)FUNDC1
DMDM Disease mutations139341
Blocks (Seattle)FUNDC1
PDB (SRS)2N9X   
PDB (PDBSum)2N9X   
PDB (IMB)2N9X   
PDB (RSDB)2N9X   
Structural Biology KnowledgeBase2N9X   
SCOP (Structural Classification of Proteins)2N9X   
CATH (Classification of proteins structures)2N9X   
SuperfamilyQ8IVP5
Peptide AtlasQ8IVP5
IPIIPI00217081   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVP5
IntAct (EBI)Q8IVP5
BioGRIDFUNDC1
STRING (EMBL)FUNDC1
ZODIACFUNDC1
Ontologies - Pathways
QuickGOQ8IVP5
Ontology : AmiGOmitophagy  mitophagy  mitophagy  response to hypoxia  response to hypoxia  protein binding  mitochondrial outer membrane  response to organonitrogen compound  integral component of mitochondrial outer membrane  
Ontology : EGO-EBImitophagy  mitophagy  mitophagy  response to hypoxia  response to hypoxia  protein binding  mitochondrial outer membrane  response to organonitrogen compound  integral component of mitochondrial outer membrane  
NDEx NetworkFUNDC1
Atlas of Cancer Signalling NetworkFUNDC1
Wikipedia pathwaysFUNDC1
Orthology - Evolution
OrthoDB139341
Phylogenetic Trees/Animal Genes : TreeFamFUNDC1
HOVERGENQ8IVP5
HOGENOMQ8IVP5
Homologs : HomoloGeneFUNDC1
Homology/Alignments : Family Browser (UCSC)FUNDC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFUNDC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FUNDC1
dbVarFUNDC1
ClinVarFUNDC1
1000_GenomesFUNDC1 
Exome Variant ServerFUNDC1
ExAC (Exome Aggregation Consortium)FUNDC1 (select the gene name)
Genetic variants : HAPMAP139341
Genomic Variants (DGV)FUNDC1 [DGVbeta]
DECIPHERFUNDC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFUNDC1 
Mutations
ICGC Data PortalFUNDC1 
TCGA Data PortalFUNDC1 
Broad Tumor PortalFUNDC1
OASIS PortalFUNDC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFUNDC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFUNDC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FUNDC1
DgiDB (Drug Gene Interaction Database)FUNDC1
DoCM (Curated mutations)FUNDC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FUNDC1 (select a term)
intoGenFUNDC1
Cancer3DFUNDC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300871   
Orphanet
MedgenFUNDC1
Genetic Testing Registry FUNDC1
NextProtQ8IVP5 [Medical]
TSGene139341
GENETestsFUNDC1
Target ValidationFUNDC1
Huge Navigator FUNDC1 [HugePedia]
snp3D : Map Gene to Disease139341
BioCentury BCIQFUNDC1
ClinGenFUNDC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD139341
Chemical/Pharm GKB GenePA134875965
Clinical trialFUNDC1
Miscellaneous
canSAR (ICR)FUNDC1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFUNDC1
EVEXFUNDC1
GoPubMedFUNDC1
iHOPFUNDC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:09:05 CEST 2017

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