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FUNDC2 (FUN14 domain containing 2)

Identity

Alias_symbol (synonym)HCBP6
DC44
Other aliasHCC3
PD03104
HGNC (Hugo) FUNDC2
LocusID (NCBI) 65991
Atlas_Id 53002
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 155026789 and ends at 155056916 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BRCC3 (Xq28) / FUNDC2 (Xq28)DEPDC1B (5q12.1) / FUNDC2 (Xq28)MIR548N (2q31.2) / FUNDC2 (Xq28)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FUNDC2   24925
Cards
Entrez_Gene (NCBI)FUNDC2  65991  FUN14 domain containing 2
AliasesDC44; HCBP6; HCC3; PD03104
GeneCards (Weizmann)FUNDC2
Ensembl hg19 (Hinxton)ENSG00000165775 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165775 [Gene_View]  chrX:155026789-155056916 [Contig_View]  FUNDC2 [Vega]
ICGC DataPortalENSG00000165775
TCGA cBioPortalFUNDC2
AceView (NCBI)FUNDC2
Genatlas (Paris)FUNDC2
WikiGenes65991
SOURCE (Princeton)FUNDC2
Genetics Home Reference (NIH)FUNDC2
Genomic and cartography
GoldenPath hg38 (UCSC)FUNDC2  -     chrX:155026789-155056916 +  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FUNDC2  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblFUNDC2 - Xq28 [CytoView hg19]  FUNDC2 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIFUNDC2 [Mapview hg19]  FUNDC2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF267862 AF320778 AI886036 AJ272054 AK091092
RefSeq transcript (Entrez)NM_023934
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FUNDC2
Cluster EST : UnigeneHs.356050 [ NCBI ]
CGAP (NCI)Hs.356050
Alternative Splicing GalleryENSG00000165775
Gene ExpressionFUNDC2 [ NCBI-GEO ]   FUNDC2 [ EBI - ARRAY_EXPRESS ]   FUNDC2 [ SEEK ]   FUNDC2 [ MEM ]
Gene Expression Viewer (FireBrowse)FUNDC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65991
GTEX Portal (Tissue expression)FUNDC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWH2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWH2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWH2
Splice isoforms : SwissVarQ9BWH2
PhosPhoSitePlusQ9BWH2
Domains : Interpro (EBI)FUN14   
Domain families : Pfam (Sanger)FUN14 (PF04930)   
Domain families : Pfam (NCBI)pfam04930   
Conserved Domain (NCBI)FUNDC2
DMDM Disease mutations65991
Blocks (Seattle)FUNDC2
SuperfamilyQ9BWH2
Human Protein AtlasENSG00000165775
Peptide AtlasQ9BWH2
HPRD06586
IPIIPI00171769   IPI00552881   IPI00878229   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWH2
IntAct (EBI)Q9BWH2
FunCoupENSG00000165775
BioGRIDFUNDC2
STRING (EMBL)FUNDC2
ZODIACFUNDC2
Ontologies - Pathways
QuickGOQ9BWH2
Ontology : AmiGOmitophagy  nucleus  mitochondrion  integral component of mitochondrial outer membrane  
Ontology : EGO-EBImitophagy  nucleus  mitochondrion  integral component of mitochondrial outer membrane  
NDEx NetworkFUNDC2
Atlas of Cancer Signalling NetworkFUNDC2
Wikipedia pathwaysFUNDC2
Orthology - Evolution
OrthoDB65991
GeneTree (enSembl)ENSG00000165775
Phylogenetic Trees/Animal Genes : TreeFamFUNDC2
HOVERGENQ9BWH2
HOGENOMQ9BWH2
Homologs : HomoloGeneFUNDC2
Homology/Alignments : Family Browser (UCSC)FUNDC2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFUNDC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FUNDC2
dbVarFUNDC2
ClinVarFUNDC2
1000_GenomesFUNDC2 
Exome Variant ServerFUNDC2
ExAC (Exome Aggregation Consortium)FUNDC2 (select the gene name)
Genetic variants : HAPMAP65991
Genomic Variants (DGV)FUNDC2 [DGVbeta]
DECIPHERFUNDC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFUNDC2 
Mutations
ICGC Data PortalFUNDC2 
TCGA Data PortalFUNDC2 
Broad Tumor PortalFUNDC2
OASIS PortalFUNDC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFUNDC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFUNDC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch FUNDC2
DgiDB (Drug Gene Interaction Database)FUNDC2
DoCM (Curated mutations)FUNDC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FUNDC2 (select a term)
intoGenFUNDC2
Cancer3DFUNDC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFUNDC2
Genetic Testing Registry FUNDC2
NextProtQ9BWH2 [Medical]
TSGene65991
GENETestsFUNDC2
Target ValidationFUNDC2
Huge Navigator FUNDC2 [HugePedia]
snp3D : Map Gene to Disease65991
BioCentury BCIQFUNDC2
ClinGenFUNDC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65991
Chemical/Pharm GKB GenePA134908797
Clinical trialFUNDC2
Miscellaneous
canSAR (ICR)FUNDC2 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFUNDC2
EVEXFUNDC2
GoPubMedFUNDC2
iHOPFUNDC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:34:30 CEST 2017

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