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FUT1 (fucosyltransferase 1 (H blood group))

Identity

Alias_namesH
HSC
fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, Bombay phenotype included)
fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase)
Other aliasHH
HGNC (Hugo) FUT1
LocusID (NCBI) 2523
Atlas_Id 46808
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 48748011 and ends at 48755390 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FUT1   4012
LRG (Locus Reference Genomic)LRG_810
Cards
Entrez_Gene (NCBI)FUT1  2523  fucosyltransferase 1 (H blood group)
AliasesH; HH; HSC
GeneCards (Weizmann)FUT1
Ensembl hg19 (Hinxton)ENSG00000174951 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174951 [Gene_View]  chr19:48748011-48755390 [Contig_View]  FUT1 [Vega]
ICGC DataPortalENSG00000174951
TCGA cBioPortalFUT1
AceView (NCBI)FUT1
Genatlas (Paris)FUT1
WikiGenes2523
SOURCE (Princeton)FUT1
Genetics Home Reference (NIH)FUT1
Genomic and cartography
GoldenPath hg38 (UCSC)FUT1  -     chr19:48748011-48755390 -  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FUT1  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblFUT1 - 19q13.33 [CytoView hg19]  FUT1 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIFUT1 [Mapview hg19]  FUT1 [Mapview hg38]
OMIM211100   616754   
Gene and transcription
Genbank (Entrez)BC074732 CN359119 D87935 D87936 D87937
RefSeq transcript (Entrez)NM_000148 NM_001329877
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FUT1
Cluster EST : UnigeneHs.69747 [ NCBI ]
CGAP (NCI)Hs.69747
Alternative Splicing GalleryENSG00000174951
Gene ExpressionFUT1 [ NCBI-GEO ]   FUT1 [ EBI - ARRAY_EXPRESS ]   FUT1 [ SEEK ]   FUT1 [ MEM ]
Gene Expression Viewer (FireBrowse)FUT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2523
GTEX Portal (Tissue expression)FUT1
Human Protein AtlasENSG00000174951-FUT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP19526   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP19526  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP19526
Splice isoforms : SwissVarP19526
Catalytic activity : Enzyme2.4.1.69 [ Enzyme-Expasy ]   2.4.1.692.4.1.69 [ IntEnz-EBI ]   2.4.1.69 [ BRENDA ]   2.4.1.69 [ KEGG ]   
PhosPhoSitePlusP19526
Domains : Interpro (EBI)Glyco_trans_11   
Domain families : Pfam (Sanger)Glyco_transf_11 (PF01531)   
Domain families : Pfam (NCBI)pfam01531   
Conserved Domain (NCBI)FUT1
DMDM Disease mutations2523
Blocks (Seattle)FUT1
SuperfamilyP19526
Human Protein Atlas [tissue]ENSG00000174951-FUT1 [tissue]
Peptide AtlasP19526
HPRD07186
IPIIPI00019466   IPI01012914   IPI00554591   IPI00978456   
Protein Interaction databases
DIP (DOE-UCLA)P19526
IntAct (EBI)P19526
FunCoupENSG00000174951
BioGRIDFUT1
STRING (EMBL)FUT1
ZODIACFUT1
Ontologies - Pathways
QuickGOP19526
Ontology : AmiGOGolgi apparatus  integral component of plasma membrane  carbohydrate metabolic process  protein glycosylation  protein glycosylation  galactoside 2-alpha-L-fucosyltransferase activity  fucosyltransferase activity  membrane  Golgi cisterna membrane  fucosylation  L-fucose catabolic process  
Ontology : EGO-EBIGolgi apparatus  integral component of plasma membrane  carbohydrate metabolic process  protein glycosylation  protein glycosylation  galactoside 2-alpha-L-fucosyltransferase activity  fucosyltransferase activity  membrane  Golgi cisterna membrane  fucosylation  L-fucose catabolic process  
Pathways : KEGGGlycosphingolipid biosynthesis - lacto and neolacto series    Glycosphingolipid biosynthesis - globo series   
NDEx NetworkFUT1
Atlas of Cancer Signalling NetworkFUT1
Wikipedia pathwaysFUT1
Orthology - Evolution
OrthoDB2523
GeneTree (enSembl)ENSG00000174951
Phylogenetic Trees/Animal Genes : TreeFamFUT1
HOVERGENP19526
HOGENOMP19526
Homologs : HomoloGeneFUT1
Homology/Alignments : Family Browser (UCSC)FUT1
Gene fusions - Rearrangements
Tumor Fusion PortalFUT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFUT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FUT1
dbVarFUT1
ClinVarFUT1
1000_GenomesFUT1 
Exome Variant ServerFUT1
ExAC (Exome Aggregation Consortium)ENSG00000174951
GNOMAD BrowserENSG00000174951
Genetic variants : HAPMAP2523
Genomic Variants (DGV)FUT1 [DGVbeta]
DECIPHERFUT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFUT1 
Mutations
ICGC Data PortalFUT1 
TCGA Data PortalFUT1 
Broad Tumor PortalFUT1
OASIS PortalFUT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFUT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFUT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FUT1
DgiDB (Drug Gene Interaction Database)FUT1
DoCM (Curated mutations)FUT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FUT1 (select a term)
intoGenFUT1
Cancer3DFUT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM211100    616754   
Orphanet
DisGeNETFUT1
MedgenFUT1
Genetic Testing Registry FUT1
NextProtP19526 [Medical]
TSGene2523
GENETestsFUT1
Target ValidationFUT1
Huge Navigator FUT1 [HugePedia]
snp3D : Map Gene to Disease2523
BioCentury BCIQFUT1
ClinGenFUT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2523
Chemical/Pharm GKB GenePA28428
Clinical trialFUT1
Miscellaneous
canSAR (ICR)FUT1 (select the gene name)
Probes
Litterature
PubMed60 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFUT1
EVEXFUT1
GoPubMedFUT1
iHOPFUT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:13:53 CET 2017

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