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FUT2 (fucosyltransferase 2)

Identity

Alias_namesSE
fucosyltransferase 2 (secretor status included)
Alias_symbol (synonym)sej
Se2
SEC2
Other aliasB12QTL1
HGNC (Hugo) FUT2
LocusID (NCBI) 2524
Atlas_Id 45946
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 49199228 and ends at 49209191 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CCDC61 (19q13.32) / FUT2 (19q13.33)CCDC61 19q13.32 / FUT2 19q13.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FUT2   4013
LRG (Locus Reference Genomic)LRG_811
Cards
Entrez_Gene (NCBI)FUT2  2524  fucosyltransferase 2
AliasesB12QTL1; SE; SEC2; Se2; 
sej
GeneCards (Weizmann)FUT2
Ensembl hg19 (Hinxton)ENSG00000176920 [Gene_View]  chr19:49199228-49209191 [Contig_View]  FUT2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000176920 [Gene_View]  chr19:49199228-49209191 [Contig_View]  FUT2 [Vega]
ICGC DataPortalENSG00000176920
TCGA cBioPortalFUT2
AceView (NCBI)FUT2
Genatlas (Paris)FUT2
WikiGenes2524
SOURCE (Princeton)FUT2
Genetics Home Reference (NIH)FUT2
Genomic and cartography
GoldenPath hg19 (UCSC)FUT2  -     chr19:49199228-49209191 +  19q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FUT2  -     19q13.33   [Description]    (hg38-Dec_2013)
EnsemblFUT2 - 19q13.33 [CytoView hg19]  FUT2 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIFUT2 [Mapview hg19]  FUT2 [Mapview hg38]
OMIM182100   612542   
Gene and transcription
Genbank (Entrez)AK290277 AY751739 BC001899 BC121066 BE266792
RefSeq transcript (Entrez)NM_000511 NM_001097638
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_007511 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)FUT2
Cluster EST : UnigeneHs.579928 [ NCBI ]
CGAP (NCI)Hs.579928
Alternative Splicing GalleryENSG00000176920
Gene ExpressionFUT2 [ NCBI-GEO ]   FUT2 [ EBI - ARRAY_EXPRESS ]   FUT2 [ SEEK ]   FUT2 [ MEM ]
Gene Expression Viewer (FireBrowse)FUT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2524
GTEX Portal (Tissue expression)FUT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ10981   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ10981  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ10981
Splice isoforms : SwissVarQ10981
Catalytic activity : Enzyme2.4.1.69 [ Enzyme-Expasy ]   2.4.1.692.4.1.69 [ IntEnz-EBI ]   2.4.1.69 [ BRENDA ]   2.4.1.69 [ KEGG ]   
PhosPhoSitePlusQ10981
Domains : Interpro (EBI)Glyco_trans_11   
Domain families : Pfam (Sanger)Glyco_transf_11 (PF01531)   
Domain families : Pfam (NCBI)pfam01531   
Conserved Domain (NCBI)FUT2
DMDM Disease mutations2524
Blocks (Seattle)FUT2
SuperfamilyQ10981
Human Protein AtlasENSG00000176920
Peptide AtlasQ10981
HPRD01629
IPIIPI00027489   IPI00759674   IPI00985371   
Protein Interaction databases
DIP (DOE-UCLA)Q10981
IntAct (EBI)Q10981
FunCoupENSG00000176920
BioGRIDFUT2
STRING (EMBL)FUT2
ZODIACFUT2
Ontologies - Pathways
QuickGOQ10981
Ontology : AmiGOGolgi apparatus  carbohydrate metabolic process  protein glycosylation  protein glycosylation  galactoside 2-alpha-L-fucosyltransferase activity  fucosyltransferase activity  integral component of membrane  Golgi cisterna membrane  fucosylation  fucosylation  L-fucose catabolic process  extracellular exosome  
Ontology : EGO-EBIGolgi apparatus  carbohydrate metabolic process  protein glycosylation  protein glycosylation  galactoside 2-alpha-L-fucosyltransferase activity  fucosyltransferase activity  integral component of membrane  Golgi cisterna membrane  fucosylation  fucosylation  L-fucose catabolic process  extracellular exosome  
Pathways : KEGGGlycosphingolipid biosynthesis - lacto and neolacto series    Glycosphingolipid biosynthesis - globo series   
NDEx NetworkFUT2
Atlas of Cancer Signalling NetworkFUT2
Wikipedia pathwaysFUT2
Orthology - Evolution
OrthoDB2524
GeneTree (enSembl)ENSG00000176920
Phylogenetic Trees/Animal Genes : TreeFamFUT2
HOVERGENQ10981
HOGENOMQ10981
Homologs : HomoloGeneFUT2
Homology/Alignments : Family Browser (UCSC)FUT2
Gene fusions - Rearrangements
Fusion : MitelmanCCDC61/FUT2 [19q13.32/19q13.33]  [t(19;19)(q13;q13)]  
Fusion: TCGACCDC61 19q13.32 FUT2 19q13.33 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFUT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FUT2
dbVarFUT2
ClinVarFUT2
1000_GenomesFUT2 
Exome Variant ServerFUT2
ExAC (Exome Aggregation Consortium)FUT2 (select the gene name)
Genetic variants : HAPMAP2524
Genomic Variants (DGV)FUT2 [DGVbeta]
DECIPHER (Syndromes)19:49199228-49209191  ENSG00000176920
CONAN: Copy Number AnalysisFUT2 
Mutations
ICGC Data PortalFUT2 
TCGA Data PortalFUT2 
Broad Tumor PortalFUT2
OASIS PortalFUT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFUT2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFUT2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FUT2
DgiDB (Drug Gene Interaction Database)FUT2
DoCM (Curated mutations)FUT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FUT2 (select a term)
intoGenFUT2
Cancer3DFUT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM182100    612542   
Orphanet
MedgenFUT2
Genetic Testing Registry FUT2
NextProtQ10981 [Medical]
TSGene2524
GENETestsFUT2
Huge Navigator FUT2 [HugePedia]
snp3D : Map Gene to Disease2524
BioCentury BCIQFUT2
ClinGenFUT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2524
Chemical/Pharm GKB GenePA28429
Clinical trialFUT2
Miscellaneous
canSAR (ICR)FUT2 (select the gene name)
Probes
Litterature
PubMed121 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFUT2
EVEXFUT2
GoPubMedFUT2
iHOPFUT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:06:44 CET 2017

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