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FUT5 (fucosyltransferase 5)

Identity

Alias (NCBI)FUC-TV
HGNC (Hugo) FUT5
HGNC Alias symbFUC-TV
HGNC Alias namealpha (1,3) fucosyltransferase
LocusID (NCBI) 2527
Atlas_Id 45680
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 5865826 and ends at 5870540 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FUT5 (19p13.3) / FUT5 (19p13.3)FUT5 (19p13.3) / ZFP36 (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)FUT5   4016
Cards
Entrez_Gene (NCBI)FUT5    fucosyltransferase 5
AliasesFUC-TV
GeneCards (Weizmann)FUT5
Ensembl hg19 (Hinxton)ENSG00000130383 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130383 [Gene_View]  ENSG00000130383 [Sequence]  chr19:5865826-5870540 [Contig_View]  FUT5 [Vega]
ICGC DataPortalENSG00000130383
TCGA cBioPortalFUT5
AceView (NCBI)FUT5
Genatlas (Paris)FUT5
SOURCE (Princeton)FUT5
Genetics Home Reference (NIH)FUT5
Genomic and cartography
GoldenPath hg38 (UCSC)FUT5  -     chr19:5865826-5870540 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FUT5  -     19p13.3   [Description]    (hg19-Feb_2009)
GoldenPathFUT5 - 19p13.3 [CytoView hg19]  FUT5 - 19p13.3 [CytoView hg38]
ImmunoBaseENSG00000130383
genome Data Viewer NCBIFUT5 [Mapview hg19]  
OMIM136835   
Gene and transcription
Genbank (Entrez)BC140905 U27329 U27330
RefSeq transcript (Entrez)NM_002034
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FUT5
Alternative Splicing GalleryENSG00000130383
Gene ExpressionFUT5 [ NCBI-GEO ]   FUT5 [ EBI - ARRAY_EXPRESS ]   FUT5 [ SEEK ]   FUT5 [ MEM ]
Gene Expression Viewer (FireBrowse)FUT5 [ Firebrowse - Broad ]
GenevisibleExpression of FUT5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2527
GTEX Portal (Tissue expression)FUT5
Human Protein AtlasENSG00000130383-FUT5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ11128   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ11128  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ11128
Splice isoforms : SwissVarQ11128
Catalytic activity : Enzyme2.4.1.65 [ Enzyme-Expasy ]   2.4.1.652.4.1.65 [ IntEnz-EBI ]   2.4.1.65 [ BRENDA ]   2.4.1.65 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ11128
Domains : Interpro (EBI)Glyco_tran_10_N    Glyco_trans_10    GT10-like_sf   
Domain families : Pfam (Sanger)Glyco_tran_10_N (PF17039)    Glyco_transf_10 (PF00852)   
Domain families : Pfam (NCBI)pfam17039    pfam00852   
Conserved Domain (NCBI)FUT5
Blocks (Seattle)FUT5
SuperfamilyQ11128
Human Protein Atlas [tissue]ENSG00000130383-FUT5 [tissue]
Peptide AtlasQ11128
HPRD00650
IPIIPI00009211   
Protein Interaction databases
DIP (DOE-UCLA)Q11128
IntAct (EBI)Q11128
BioGRIDFUT5
STRING (EMBL)FUT5
ZODIACFUT5
Ontologies - Pathways
QuickGOQ11128
Ontology : AmiGOGolgi apparatus  carbohydrate metabolic process  protein glycosylation  protein glycosylation  ceramide metabolic process  fucosyltransferase activity  oligosaccharide metabolic process  integral component of membrane  3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity  4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase activity  Golgi cisterna membrane  fucosylation  L-fucose catabolic process  alpha-(1->3)-fucosyltransferase activity  alpha-(1->3)-fucosyltransferase activity  
Ontology : EGO-EBIGolgi apparatus  carbohydrate metabolic process  protein glycosylation  protein glycosylation  ceramide metabolic process  fucosyltransferase activity  oligosaccharide metabolic process  integral component of membrane  3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity  4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase activity  Golgi cisterna membrane  fucosylation  L-fucose catabolic process  alpha-(1->3)-fucosyltransferase activity  alpha-(1->3)-fucosyltransferase activity  
Pathways : KEGGGlycosphingolipid biosynthesis - lacto and neolacto series   
NDEx NetworkFUT5
Atlas of Cancer Signalling NetworkFUT5
Wikipedia pathwaysFUT5
Orthology - Evolution
OrthoDB2527
GeneTree (enSembl)ENSG00000130383
Phylogenetic Trees/Animal Genes : TreeFamFUT5
HOGENOMQ11128
Homologs : HomoloGeneFUT5
Homology/Alignments : Family Browser (UCSC)FUT5
Gene fusions - Rearrangements
Fusion : QuiverFUT5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFUT5 [hg38]
dbVarFUT5
ClinVarFUT5
MonarchFUT5
1000_GenomesFUT5 
Exome Variant ServerFUT5
GNOMAD BrowserENSG00000130383
Varsome BrowserFUT5
Genomic Variants (DGV)FUT5 [DGVbeta]
DECIPHERFUT5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFUT5 
Mutations
ICGC Data PortalFUT5 
TCGA Data PortalFUT5 
Broad Tumor PortalFUT5
OASIS PortalFUT5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFUT5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFUT5
Mutations and Diseases : HGMDFUT5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FUT5
DgiDB (Drug Gene Interaction Database)FUT5
DoCM (Curated mutations)FUT5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FUT5 (select a term)
intoGenFUT5
Cancer3DFUT5(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM136835   
Orphanet
DisGeNETFUT5
MedgenFUT5
Genetic Testing Registry FUT5
NextProtQ11128 [Medical]
GENETestsFUT5
Target ValidationFUT5
Huge Navigator FUT5 [HugePedia]
ClinGenFUT5
Clinical trials, drugs, therapy
MyCancerGenomeFUT5
Protein Interactions : CTD
Pharm GKB GenePA28432
PharosQ11128
Clinical trialFUT5
Miscellaneous
canSAR (ICR)FUT5 (select the gene name)
HarmonizomeFUT5
DataMed IndexFUT5
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFUT5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jan 1 18:16:21 CET 2021

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