Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FXYD4 (FXYD domain containing ion transport regulator 4)

Identity

Alias_namesFXYD domain-containing ion transport regulator 4
Alias_symbol (synonym)CHIF
Other alias
HGNC (Hugo) FXYD4
LocusID (NCBI) 53828
Atlas_Id 63634
Location 10q11.21  [Link to chromosome band 10q11]
Location_base_pair Starts at 43867092 and ends at 43871783 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZNF487 (10q11.21) / FXYD4 (10q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FXYD4   4028
Cards
Entrez_Gene (NCBI)FXYD4  53828  FXYD domain containing ion transport regulator 4
AliasesCHIF
GeneCards (Weizmann)FXYD4
Ensembl hg19 (Hinxton)ENSG00000150201 [Gene_View]  chr10:43867092-43871783 [Contig_View]  FXYD4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000150201 [Gene_View]  chr10:43867092-43871783 [Contig_View]  FXYD4 [Vega]
ICGC DataPortalENSG00000150201
TCGA cBioPortalFXYD4
AceView (NCBI)FXYD4
Genatlas (Paris)FXYD4
WikiGenes53828
SOURCE (Princeton)FXYD4
Genetics Home Reference (NIH)FXYD4
Genomic and cartography
GoldenPath hg19 (UCSC)FXYD4  -     chr10:43867092-43871783 +  10q11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FXYD4  -     10q11.21   [Description]    (hg38-Dec_2013)
EnsemblFXYD4 - 10q11.21 [CytoView hg19]  FXYD4 - 10q11.21 [CytoView hg38]
Mapping of homologs : NCBIFXYD4 [Mapview hg19]  FXYD4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA759244 AI829935 AY358584 BC054876 BF507928
RefSeq transcript (Entrez)NM_001184963 NM_173160
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929371
Consensus coding sequences : CCDS (NCBI)FXYD4
Cluster EST : UnigeneHs.130497 [ NCBI ]
CGAP (NCI)Hs.130497
Alternative Splicing GalleryENSG00000150201
Gene ExpressionFXYD4 [ NCBI-GEO ]   FXYD4 [ EBI - ARRAY_EXPRESS ]   FXYD4 [ SEEK ]   FXYD4 [ MEM ]
Gene Expression Viewer (FireBrowse)FXYD4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)53828
GTEX Portal (Tissue expression)FXYD4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59646   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59646  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59646
Splice isoforms : SwissVarP59646
PhosPhoSitePlusP59646
Domaine pattern : Prosite (Expaxy)FXYD (PS01310)   
Domains : Interpro (EBI)Ion-transport_regulator_FXYD   
Domain families : Pfam (Sanger)ATP1G1_PLM_MAT8 (PF02038)   
Domain families : Pfam (NCBI)pfam02038   
Conserved Domain (NCBI)FXYD4
DMDM Disease mutations53828
Blocks (Seattle)FXYD4
SuperfamilyP59646
Human Protein AtlasENSG00000150201
Peptide AtlasP59646
HPRD07019
IPIIPI00386430   
Protein Interaction databases
DIP (DOE-UCLA)P59646
IntAct (EBI)P59646
FunCoupENSG00000150201
BioGRIDFXYD4
STRING (EMBL)FXYD4
ZODIACFXYD4
Ontologies - Pathways
QuickGOP59646
Ontology : AmiGOpotassium channel activity  plasma membrane  integral component of plasma membrane  sodium channel regulator activity  ion transmembrane transport  ATPase binding  transmembrane transport  potassium ion transmembrane transport  regulation of sodium ion transmembrane transporter activity  
Ontology : EGO-EBIpotassium channel activity  plasma membrane  integral component of plasma membrane  sodium channel regulator activity  ion transmembrane transport  ATPase binding  transmembrane transport  potassium ion transmembrane transport  regulation of sodium ion transmembrane transporter activity  
Pathways : KEGGAldosterone-regulated sodium reabsorption   
NDEx NetworkFXYD4
Atlas of Cancer Signalling NetworkFXYD4
Wikipedia pathwaysFXYD4
Orthology - Evolution
OrthoDB53828
GeneTree (enSembl)ENSG00000150201
Phylogenetic Trees/Animal Genes : TreeFamFXYD4
HOVERGENP59646
HOGENOMP59646
Homologs : HomoloGeneFXYD4
Homology/Alignments : Family Browser (UCSC)FXYD4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFXYD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FXYD4
dbVarFXYD4
ClinVarFXYD4
1000_GenomesFXYD4 
Exome Variant ServerFXYD4
ExAC (Exome Aggregation Consortium)FXYD4 (select the gene name)
Genetic variants : HAPMAP53828
Genomic Variants (DGV)FXYD4 [DGVbeta]
DECIPHER (Syndromes)10:43867092-43871783  ENSG00000150201
CONAN: Copy Number AnalysisFXYD4 
Mutations
ICGC Data PortalFXYD4 
TCGA Data PortalFXYD4 
Broad Tumor PortalFXYD4
OASIS PortalFXYD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFXYD4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFXYD4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FXYD4
DgiDB (Drug Gene Interaction Database)FXYD4
DoCM (Curated mutations)FXYD4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FXYD4 (select a term)
intoGenFXYD4
Cancer3DFXYD4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFXYD4
Genetic Testing Registry FXYD4
NextProtP59646 [Medical]
TSGene53828
GENETestsFXYD4
Huge Navigator FXYD4 [HugePedia]
snp3D : Map Gene to Disease53828
BioCentury BCIQFXYD4
ClinGenFXYD4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD53828
Chemical/Pharm GKB GenePA28444
Clinical trialFXYD4
Miscellaneous
canSAR (ICR)FXYD4 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFXYD4
EVEXFXYD4
GoPubMedFXYD4
iHOPFXYD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:05:35 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.