Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FXYD6-FXYD2 (FXYD6-FXYD2 readthrough)

Identity

Other alias-
HGNC (Hugo) FXYD6-FXYD2
LocusID (NCBI) 100533181
Atlas_Id 63635
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 117690790 and ends at 117747746 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CLEC14A (14q21.1) / FXYD6-FXYD2 (11q23.3)FXYD6-FXYD2 (11q23.3) / FXYD6-FXYD2 (11q23.3)FXYD6-FXYD2 (11q23.3) / LOC100507412 (-)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FXYD6-FXYD2   39978
Cards
Entrez_Gene (NCBI)FXYD6-FXYD2  100533181  FXYD6-FXYD2 readthrough
Aliases
GeneCards (Weizmann)FXYD6-FXYD2
Ensembl hg19 (Hinxton)ENSG00000137726 [Gene_View]  chr11:117690790-117747746 [Contig_View]  FXYD6-FXYD2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000137726 [Gene_View]  chr11:117690790-117747746 [Contig_View]  FXYD6-FXYD2 [Vega]
ICGC DataPortalENSG00000137726
TCGA cBioPortalFXYD6-FXYD2
AceView (NCBI)FXYD6-FXYD2
Genatlas (Paris)FXYD6-FXYD2
WikiGenes100533181
SOURCE (Princeton)FXYD6-FXYD2
Genetics Home Reference (NIH)FXYD6-FXYD2
Genomic and cartography
GoldenPath hg19 (UCSC)FXYD6-FXYD2  -     chr11:117690790-117747746 -  11q23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FXYD6-FXYD2  -     11q23.3   [Description]    (hg38-Dec_2013)
EnsemblFXYD6-FXYD2 - 11q23.3 [CytoView hg19]  FXYD6-FXYD2 - 11q23.3 [CytoView hg38]
Mapping of homologs : NCBIFXYD6-FXYD2 [Mapview hg19]  FXYD6-FXYD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)CN310658 FY211982 FY214031
RefSeq transcript (Entrez)NM_001204268 NM_001243598
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)FXYD6-FXYD2
Cluster EST : UnigeneHs.744850 [ NCBI ]
CGAP (NCI)Hs.744850
Alternative Splicing GalleryENSG00000137726
Gene ExpressionFXYD6-FXYD2 [ NCBI-GEO ]   FXYD6-FXYD2 [ EBI - ARRAY_EXPRESS ]   FXYD6-FXYD2 [ SEEK ]   FXYD6-FXYD2 [ MEM ]
Gene Expression Viewer (FireBrowse)FXYD6-FXYD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100533181
GTEX Portal (Tissue expression)FXYD6-FXYD2
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FXYD6-FXYD2
DMDM Disease mutations100533181
Blocks (Seattle)FXYD6-FXYD2
Human Protein AtlasENSG00000137726
IPIIPI00978115   
Protein Interaction databases
FunCoupENSG00000137726
BioGRIDFXYD6-FXYD2
STRING (EMBL)FXYD6-FXYD2
ZODIACFXYD6-FXYD2
Ontologies - Pathways
Huge Navigator FXYD6-FXYD2 [HugePedia]
snp3D : Map Gene to Disease100533181
BioCentury BCIQFXYD6-FXYD2
ClinGenFXYD6-FXYD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100533181
Clinical trialFXYD6-FXYD2
Miscellaneous
canSAR (ICR)FXYD6-FXYD2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFXYD6-FXYD2
EVEXFXYD6-FXYD2
GoPubMedFXYD6-FXYD2
iHOPFXYD6-FXYD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:05:35 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.