Atlas of Genetics and Cytogenetics in Oncology and Haematology

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FXYD6 (FXYD domain containing ion transport regulator 6)

Identity

Alias_namesFXYD domain-containing ion transport regulator 6
Other alias-
HGNC (Hugo) FXYD6
LocusID (NCBI) 53826
Atlas_Id 53003
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 117836976 and ends at 117877031 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AFF1 (4q21.3) / FXYD6 (11q23.3)FXYD6 (11q23.3) / CD3G (11q23.3)FXYD6 (11q23.3) / KMT2A (11q23.3)
FXYD6 (11q23.3) / OSBP2 (22q12.2)FXYD6 (11q23.3) / ZEB2 (2q22.3)FXYD6 11q23.3 / CD3G 11q23.3
FXYD6 11q23.3 / OSBP2 22q12.2FXYD6 11q23.3 / ZEB2 2q22.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Leukemias implicated (Data extracted from papers in the Atlas) [ 2 ]
  ins(4;11)(q21;q23q23) AFF1/FXYD6
ins(4;11)(q21;q23q23) FXYD6/KMT2A

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 3 ]
  t(2;11)(q22;q23) FXYD6/ZEB2
FXYD6/CD3G (11q23)
t(11;22)(q23;q12) FXYD6/OSBP2

External links

Nomenclature
HGNC (Hugo)FXYD6   4030
Cards
Entrez_Gene (NCBI)FXYD6  53826  FXYD domain containing ion transport regulator 6
Aliases
GeneCards (Weizmann)FXYD6
Ensembl hg19 (Hinxton)ENSG00000137726 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137726 [Gene_View]  ENSG00000137726 [Sequence]  chr11:117836976-117877031 [Contig_View]  FXYD6 [Vega]
ICGC DataPortalENSG00000137726
TCGA cBioPortalFXYD6
AceView (NCBI)FXYD6
Genatlas (Paris)FXYD6
WikiGenes53826
SOURCE (Princeton)FXYD6
Genetics Home Reference (NIH)FXYD6
Genomic and cartography
GoldenPath hg38 (UCSC)FXYD6  -     chr11:117836976-117877031 -  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FXYD6  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblFXYD6 - 19q13.12 [CytoView hg19]  FXYD6 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIFXYD6 [Mapview hg19]  FXYD6 [Mapview hg38]
OMIM606683   
Gene and transcription
Genbank (Entrez)AK055389 AK092198 AK289629 AK290757 AK311736
RefSeq transcript (Entrez)NM_001164831 NM_001164832 NM_001164836 NM_001164837 NM_022003
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FXYD6
Cluster EST : UnigeneHs.744850 [ NCBI ]
CGAP (NCI)Hs.744850
Alternative Splicing GalleryENSG00000137726
Gene ExpressionFXYD6 [ NCBI-GEO ]   FXYD6 [ EBI - ARRAY_EXPRESS ]   FXYD6 [ SEEK ]   FXYD6 [ MEM ]
Gene Expression Viewer (FireBrowse)FXYD6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)53826
GTEX Portal (Tissue expression)FXYD6
Human Protein AtlasENSG00000137726-FXYD6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0Q3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0Q3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0Q3
Splice isoforms : SwissVarQ9H0Q3
PhosPhoSitePlusQ9H0Q3
Domaine pattern : Prosite (Expaxy)FXYD (PS01310)   
Domains : Interpro (EBI)Ion-transport_regulator_FXYD   
Domain families : Pfam (Sanger)ATP1G1_PLM_MAT8 (PF02038)   
Domain families : Pfam (NCBI)pfam02038   
Domain structure : Prodom (Prabi Lyon)PD005989 (PD005989)   
Conserved Domain (NCBI)FXYD6
DMDM Disease mutations53826
Blocks (Seattle)FXYD6
SuperfamilyQ9H0Q3
Human Protein Atlas [tissue]ENSG00000137726-FXYD6 [tissue]
Peptide AtlasQ9H0Q3
HPRD09456
IPIIPI00004367   IPI00978307   IPI00978559   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0Q3
IntAct (EBI)Q9H0Q3
FunCoupENSG00000137726
BioGRIDFXYD6
STRING (EMBL)FXYD6
ZODIACFXYD6
Ontologies - Pathways
QuickGOQ9H0Q3
Ontology : AmiGOmolecular_function  ion channel activity  protein binding  plasma membrane  plasma membrane  biological_process  sodium channel regulator activity  ion transmembrane transport  regulation of sodium ion transmembrane transporter activity  
Ontology : EGO-EBImolecular_function  ion channel activity  protein binding  plasma membrane  plasma membrane  biological_process  sodium channel regulator activity  ion transmembrane transport  regulation of sodium ion transmembrane transporter activity  
NDEx NetworkFXYD6
Atlas of Cancer Signalling NetworkFXYD6
Wikipedia pathwaysFXYD6
Orthology - Evolution
OrthoDB53826
GeneTree (enSembl)ENSG00000137726
Phylogenetic Trees/Animal Genes : TreeFamFXYD6
HOVERGENQ9H0Q3
HOGENOMQ9H0Q3
Homologs : HomoloGeneFXYD6
Homology/Alignments : Family Browser (UCSC)FXYD6
Gene fusions - Rearrangements
Fusion : MitelmanAFF1/FXYD6 [4q21.3/11q23.3]  [ins(4;11)(q21;q23q23)]  
Fusion : MitelmanFXYD6/CD3G [11q23.3/11q23.3]  [t(11;11)(q23;q23)]  
Fusion : MitelmanFXYD6/OSBP2 [11q23.3/22q12.2]  [t(11;22)(q23;q12)]  
Fusion : MitelmanFXYD6/ZEB2 [11q23.3/2q22.3]  [t(2;11)(q22;q23)]  
Fusion PortalFXYD6 11q23.3 CD3G 11q23.3 LUAD
Fusion PortalFXYD6 11q23.3 OSBP2 22q12.2 LGG
Fusion PortalFXYD6 11q23.3 ZEB2 2q22.3 LGG
Fusion : QuiverFXYD6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFXYD6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FXYD6
dbVarFXYD6
ClinVarFXYD6
1000_GenomesFXYD6 
Exome Variant ServerFXYD6
ExAC (Exome Aggregation Consortium)ENSG00000137726
GNOMAD BrowserENSG00000137726
Varsome BrowserFXYD6
Genetic variants : HAPMAP53826
Genomic Variants (DGV)FXYD6 [DGVbeta]
DECIPHERFXYD6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFXYD6 
Mutations
ICGC Data PortalFXYD6 
TCGA Data PortalFXYD6 
Broad Tumor PortalFXYD6
OASIS PortalFXYD6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFXYD6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFXYD6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FXYD6
DgiDB (Drug Gene Interaction Database)FXYD6
DoCM (Curated mutations)FXYD6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FXYD6 (select a term)
intoGenFXYD6
Cancer3DFXYD6(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606683   
Orphanet
DisGeNETFXYD6
MedgenFXYD6
Genetic Testing Registry FXYD6
NextProtQ9H0Q3 [Medical]
TSGene53826
GENETestsFXYD6
Target ValidationFXYD6
Huge Navigator FXYD6 [HugePedia]
snp3D : Map Gene to Disease53826
BioCentury BCIQFXYD6
ClinGenFXYD6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD53826
Chemical/Pharm GKB GenePA28446
Clinical trialFXYD6
Miscellaneous
canSAR (ICR)FXYD6 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFXYD6
EVEXFXYD6
GoPubMedFXYD6
iHOPFXYD6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Aug 16 11:02:56 CEST 2018
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