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FXYD7 (FXYD domain containing ion transport regulator 7)

Identity

Alias_namesFXYD domain-containing ion transport regulator 7
Other alias-
HGNC (Hugo) FXYD7
LocusID (NCBI) 53822
Atlas_Id 63636
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 35634154 and ends at 35645205 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FXYD7   4034
Cards
Entrez_Gene (NCBI)FXYD7  53822  FXYD domain containing ion transport regulator 7
Aliases
GeneCards (Weizmann)FXYD7
Ensembl hg19 (Hinxton)ENSG00000221946 [Gene_View]  chr19:35634154-35645205 [Contig_View]  FXYD7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000221946 [Gene_View]  chr19:35634154-35645205 [Contig_View]  FXYD7 [Vega]
ICGC DataPortalENSG00000221946
TCGA cBioPortalFXYD7
AceView (NCBI)FXYD7
Genatlas (Paris)FXYD7
WikiGenes53822
SOURCE (Princeton)FXYD7
Genetics Home Reference (NIH)FXYD7
Genomic and cartography
GoldenPath hg19 (UCSC)FXYD7  -     chr19:35634154-35645205 +  19q13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FXYD7  -     19q13.12   [Description]    (hg38-Dec_2013)
EnsemblFXYD7 - 19q13.12 [CytoView hg19]  FXYD7 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIFXYD7 [Mapview hg19]  FXYD7 [Mapview hg38]
OMIM606684   
Gene and transcription
Genbank (Entrez)AI929519 AK057825 AK296405 BC018619 DQ892489
RefSeq transcript (Entrez)NM_022006
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)FXYD7
Cluster EST : UnigeneHs.134729 [ NCBI ]
CGAP (NCI)Hs.134729
Alternative Splicing GalleryENSG00000221946
Gene ExpressionFXYD7 [ NCBI-GEO ]   FXYD7 [ EBI - ARRAY_EXPRESS ]   FXYD7 [ SEEK ]   FXYD7 [ MEM ]
Gene Expression Viewer (FireBrowse)FXYD7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)53822
GTEX Portal (Tissue expression)FXYD7
Protein : pattern, domain, 3D structure
UniProt/SwissProtP58549   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP58549  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP58549
Splice isoforms : SwissVarP58549
PhosPhoSitePlusP58549
Domaine pattern : Prosite (Expaxy)FXYD (PS01310)   
Domains : Interpro (EBI)Ion-transport_regulator_FXYD   
Domain families : Pfam (Sanger)ATP1G1_PLM_MAT8 (PF02038)   
Domain families : Pfam (NCBI)pfam02038   
Domain structure : Prodom (Prabi Lyon)PD005989 (PD005989)   
Conserved Domain (NCBI)FXYD7
DMDM Disease mutations53822
Blocks (Seattle)FXYD7
SuperfamilyP58549
Human Protein AtlasENSG00000221946
Peptide AtlasP58549
HPRD09457
IPIIPI00067920   IPI00908854   
Protein Interaction databases
DIP (DOE-UCLA)P58549
IntAct (EBI)P58549
FunCoupENSG00000221946
BioGRIDFXYD7
STRING (EMBL)FXYD7
ZODIACFXYD7
Ontologies - Pathways
QuickGOP58549
Ontology : AmiGOion channel activity  protein binding  plasma membrane  integral component of plasma membrane  sodium channel regulator activity  ion transmembrane transport  ATPase binding  transmembrane transport  regulation of sodium ion transmembrane transporter activity  
Ontology : EGO-EBIion channel activity  protein binding  plasma membrane  integral component of plasma membrane  sodium channel regulator activity  ion transmembrane transport  ATPase binding  transmembrane transport  regulation of sodium ion transmembrane transporter activity  
NDEx NetworkFXYD7
Atlas of Cancer Signalling NetworkFXYD7
Wikipedia pathwaysFXYD7
Orthology - Evolution
OrthoDB53822
GeneTree (enSembl)ENSG00000221946
Phylogenetic Trees/Animal Genes : TreeFamFXYD7
HOVERGENP58549
HOGENOMP58549
Homologs : HomoloGeneFXYD7
Homology/Alignments : Family Browser (UCSC)FXYD7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFXYD7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FXYD7
dbVarFXYD7
ClinVarFXYD7
1000_GenomesFXYD7 
Exome Variant ServerFXYD7
ExAC (Exome Aggregation Consortium)FXYD7 (select the gene name)
Genetic variants : HAPMAP53822
Genomic Variants (DGV)FXYD7 [DGVbeta]
DECIPHER (Syndromes)19:35634154-35645205  ENSG00000221946
CONAN: Copy Number AnalysisFXYD7 
Mutations
ICGC Data PortalFXYD7 
TCGA Data PortalFXYD7 
Broad Tumor PortalFXYD7
OASIS PortalFXYD7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFXYD7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFXYD7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FXYD7
DgiDB (Drug Gene Interaction Database)FXYD7
DoCM (Curated mutations)FXYD7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FXYD7 (select a term)
intoGenFXYD7
Cancer3DFXYD7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606684   
Orphanet
MedgenFXYD7
Genetic Testing Registry FXYD7
NextProtP58549 [Medical]
TSGene53822
GENETestsFXYD7
Huge Navigator FXYD7 [HugePedia]
snp3D : Map Gene to Disease53822
BioCentury BCIQFXYD7
ClinGenFXYD7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD53822
Chemical/Pharm GKB GenePA28450
Clinical trialFXYD7
Miscellaneous
canSAR (ICR)FXYD7 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFXYD7
EVEXFXYD7
GoPubMedFXYD7
iHOPFXYD7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:05:35 CET 2017

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