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FYB2 (FYN binding protein 2)

Identity

Alias_namesC1orf168
chromosome 1 open reading frame 168
Alias_symbol (synonym)RP4-758N20.2
FLJ43208
ARAP
Other alias
HGNC (Hugo) FYB2
LocusID (NCBI) 199920
Atlas_Id 79329
Location 1p32.2  [Link to chromosome band 1p32]
Location_base_pair Starts at 56718804 and ends at 56819696 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)FYB2   27295
Cards
Entrez_Gene (NCBI)FYB2  199920  FYN binding protein 2
AliasesARAP; C1orf168
GeneCards (Weizmann)FYB2
Ensembl hg19 (Hinxton)ENSG00000187889 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187889 [Gene_View]  chr1:56718804-56819696 [Contig_View]  FYB2 [Vega]
ICGC DataPortalENSG00000187889
TCGA cBioPortalFYB2
AceView (NCBI)FYB2
Genatlas (Paris)FYB2
WikiGenes199920
SOURCE (Princeton)FYB2
Genetics Home Reference (NIH)FYB2
Genomic and cartography
GoldenPath hg38 (UCSC)FYB2  -     chr1:56718804-56819696 -  1p32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FYB2  -     1p32.2   [Description]    (hg19-Feb_2009)
EnsemblFYB2 - 1p32.2 [CytoView hg19]  FYB2 - 1p32.2 [CytoView hg38]
Mapping of homologs : NCBIFYB2 [Mapview hg19]  FYB2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093468 AK125198 AK310842 BU686304 BX648439
RefSeq transcript (Entrez)NM_001004303
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FYB2
Cluster EST : UnigeneHs.437655 [ NCBI ]
CGAP (NCI)Hs.437655
Alternative Splicing GalleryENSG00000187889
Gene ExpressionFYB2 [ NCBI-GEO ]   FYB2 [ EBI - ARRAY_EXPRESS ]   FYB2 [ SEEK ]   FYB2 [ MEM ]
Gene Expression Viewer (FireBrowse)FYB2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)199920
GTEX Portal (Tissue expression)FYB2
Human Protein AtlasENSG00000187889-FYB2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VWT5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VWT5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VWT5
Splice isoforms : SwissVarQ5VWT5
PhosPhoSitePlusQ5VWT5
Domains : Interpro (EBI)hSH3    SH3_domain   
Domain families : Pfam (Sanger)hSH3 (PF14603)   
Domain families : Pfam (NCBI)pfam14603   
Conserved Domain (NCBI)FYB2
DMDM Disease mutations199920
Blocks (Seattle)FYB2
SuperfamilyQ5VWT5
Human Protein Atlas [tissue]ENSG00000187889-FYB2 [tissue]
Peptide AtlasQ5VWT5
IPIIPI00464950   IPI00855995   
Protein Interaction databases
DIP (DOE-UCLA)Q5VWT5
IntAct (EBI)Q5VWT5
FunCoupENSG00000187889
BioGRIDFYB2
STRING (EMBL)FYB2
ZODIACFYB2
Ontologies - Pathways
QuickGOQ5VWT5
Ontology : AmiGOimmunological synapse  protein binding  cell adhesion mediated by integrin  membrane raft  T cell receptor signaling pathway  
Ontology : EGO-EBIimmunological synapse  protein binding  cell adhesion mediated by integrin  membrane raft  T cell receptor signaling pathway  
NDEx NetworkFYB2
Atlas of Cancer Signalling NetworkFYB2
Wikipedia pathwaysFYB2
Orthology - Evolution
OrthoDB199920
GeneTree (enSembl)ENSG00000187889
Phylogenetic Trees/Animal Genes : TreeFamFYB2
HOVERGENQ5VWT5
HOGENOMQ5VWT5
Homologs : HomoloGeneFYB2
Homology/Alignments : Family Browser (UCSC)FYB2
Gene fusions - Rearrangements
Tumor Fusion PortalFYB2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFYB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FYB2
dbVarFYB2
ClinVarFYB2
1000_GenomesFYB2 
Exome Variant ServerFYB2
ExAC (Exome Aggregation Consortium)ENSG00000187889
GNOMAD BrowserENSG00000187889
Genetic variants : HAPMAP199920
Genomic Variants (DGV)FYB2 [DGVbeta]
DECIPHERFYB2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFYB2 
Mutations
ICGC Data PortalFYB2 
TCGA Data PortalFYB2 
Broad Tumor PortalFYB2
OASIS PortalFYB2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFYB2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FYB2
DgiDB (Drug Gene Interaction Database)FYB2
DoCM (Curated mutations)FYB2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FYB2 (select a term)
intoGenFYB2
Cancer3DFYB2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFYB2
MedgenFYB2
Genetic Testing Registry FYB2
NextProtQ5VWT5 [Medical]
TSGene199920
GENETestsFYB2
Target ValidationFYB2
Huge Navigator FYB2 [HugePedia]
snp3D : Map Gene to Disease199920
BioCentury BCIQFYB2
ClinGenFYB2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD199920
Chemical/Pharm GKB GenePA142672418
Clinical trialFYB2
Miscellaneous
canSAR (ICR)FYB2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFYB2
EVEXFYB2
GoPubMedFYB2
iHOPFYB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:30:39 CET 2017

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