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FYCO1 (FYVE and coiled-coil domain containing 1)

Identity

Alias_symbol (synonym)FLJ13335
ZFYVE7
Other aliasCATC2
CTRCT18
RUFY3
HGNC (Hugo) FYCO1
LocusID (NCBI) 79443
Atlas_Id 43868
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 45959391 and ends at 46037316 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FYCO1 (3p21.31) / ATG7 (3p25.3)FYCO1 (3p21.31) / FKBP15 (9q32)FYCO1 (3p21.31) / FYCO1 (3p21.31)
FYCO1 (3p21.31) / HRAS (11p15.5)FYCO1 (3p21.31) / RAF1 (3p25.2)FYCO1 (3p21.31) / SAT1 (Xp22.11)
FYCO1 (3p21.31) / TLN1 (9p13.3)PDCD11 (10q24.33) / FYCO1 (3p21.31)PPME1 (11q13.4) / FYCO1 (3p21.31)
FYCO1 3p21.31 / ATG7 3p25.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FYCO1   14673
Cards
Entrez_Gene (NCBI)FYCO1  79443  FYVE and coiled-coil domain containing 1
AliasesCATC2; CTRCT18; RUFY3; ZFYVE7
GeneCards (Weizmann)FYCO1
Ensembl hg19 (Hinxton)ENSG00000163820 [Gene_View]  chr3:45959391-46037316 [Contig_View]  FYCO1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000163820 [Gene_View]  chr3:45959391-46037316 [Contig_View]  FYCO1 [Vega]
ICGC DataPortalENSG00000163820
TCGA cBioPortalFYCO1
AceView (NCBI)FYCO1
Genatlas (Paris)FYCO1
WikiGenes79443
SOURCE (Princeton)FYCO1
Genetics Home Reference (NIH)FYCO1
Genomic and cartography
GoldenPath hg19 (UCSC)FYCO1  -     chr3:45959391-46037316 -  3p21.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FYCO1  -     3p21.31   [Description]    (hg38-Dec_2013)
EnsemblFYCO1 - 3p21.31 [CytoView hg19]  FYCO1 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBIFYCO1 [Mapview hg19]  FYCO1 [Mapview hg38]
OMIM607182   610019   
Gene and transcription
Genbank (Entrez)AA628466 AJ292348 AK023397 AK074165 AL832358
RefSeq transcript (Entrez)NM_024513
RefSeq genomic (Entrez)NC_000003 NC_018914 NG_031955 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)FYCO1
Cluster EST : UnigeneHs.739775 [ NCBI ]
CGAP (NCI)Hs.739775
Alternative Splicing GalleryENSG00000163820
Gene ExpressionFYCO1 [ NCBI-GEO ]   FYCO1 [ EBI - ARRAY_EXPRESS ]   FYCO1 [ SEEK ]   FYCO1 [ MEM ]
Gene Expression Viewer (FireBrowse)FYCO1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79443
GTEX Portal (Tissue expression)FYCO1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQS8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQS8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQS8
Splice isoforms : SwissVarQ9BQS8
PhosPhoSitePlusQ9BQS8
Domaine pattern : Prosite (Expaxy)GOLD (PS50866)    RUN (PS50826)    ZF_FYVE (PS50178)   
Domains : Interpro (EBI)GOLD_dom    Run_dom    Znf_FYVE    Znf_FYVE-rel    Znf_FYVE_PHD    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)FYVE (PF01363)    RUN (PF02759)   
Domain families : Pfam (NCBI)pfam01363    pfam02759   
Domain families : Smart (EMBL)FYVE (SM00064)  
Conserved Domain (NCBI)FYCO1
DMDM Disease mutations79443
Blocks (Seattle)FYCO1
PDB (SRS)5D94   
PDB (PDBSum)5D94   
PDB (IMB)5D94   
PDB (RSDB)5D94   
Structural Biology KnowledgeBase5D94   
SCOP (Structural Classification of Proteins)5D94   
CATH (Classification of proteins structures)5D94   
SuperfamilyQ9BQS8
Human Protein AtlasENSG00000163820
Peptide AtlasQ9BQS8
HPRD06215
IPIIPI00001580   IPI00760784   IPI00760582   IPI00974191   IPI00924770   IPI00790978   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQS8
IntAct (EBI)Q9BQS8
FunCoupENSG00000163820
BioGRIDFYCO1
STRING (EMBL)FYCO1
ZODIACFYCO1
Ontologies - Pathways
QuickGOQ9BQS8
Ontology : AmiGOprotein binding  lysosome  late endosome  autophagosome  membrane  integral component of membrane  cytoplasmic vesicle  intracellular membrane-bounded organelle  metal ion binding  plus-end-directed vesicle transport along microtubule  
Ontology : EGO-EBIprotein binding  lysosome  late endosome  autophagosome  membrane  integral component of membrane  cytoplasmic vesicle  intracellular membrane-bounded organelle  metal ion binding  plus-end-directed vesicle transport along microtubule  
NDEx NetworkFYCO1
Atlas of Cancer Signalling NetworkFYCO1
Wikipedia pathwaysFYCO1
Orthology - Evolution
OrthoDB79443
GeneTree (enSembl)ENSG00000163820
Phylogenetic Trees/Animal Genes : TreeFamFYCO1
HOVERGENQ9BQS8
HOGENOMQ9BQS8
Homologs : HomoloGeneFYCO1
Homology/Alignments : Family Browser (UCSC)FYCO1
Gene fusions - Rearrangements
Fusion : MitelmanFYCO1/ATG7 [3p21.31/3p25.3]  
Fusion : MitelmanFYCO1/RAF1 [3p21.31/3p25.2]  [t(3;3)(p21;p25)]  
Fusion: TCGAFYCO1 3p21.31 ATG7 3p25.3 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFYCO1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FYCO1
dbVarFYCO1
ClinVarFYCO1
1000_GenomesFYCO1 
Exome Variant ServerFYCO1
ExAC (Exome Aggregation Consortium)FYCO1 (select the gene name)
Genetic variants : HAPMAP79443
Genomic Variants (DGV)FYCO1 [DGVbeta]
DECIPHER (Syndromes)3:45959391-46037316  ENSG00000163820
CONAN: Copy Number AnalysisFYCO1 
Mutations
ICGC Data PortalFYCO1 
TCGA Data PortalFYCO1 
Broad Tumor PortalFYCO1
OASIS PortalFYCO1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFYCO1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFYCO1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FYCO1
DgiDB (Drug Gene Interaction Database)FYCO1
DoCM (Curated mutations)FYCO1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FYCO1 (select a term)
intoGenFYCO1
Cancer3DFYCO1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607182    610019   
Orphanet14008    14011   
MedgenFYCO1
Genetic Testing Registry FYCO1
NextProtQ9BQS8 [Medical]
TSGene79443
GENETestsFYCO1
Huge Navigator FYCO1 [HugePedia]
snp3D : Map Gene to Disease79443
BioCentury BCIQFYCO1
ClinGenFYCO1 (curated)
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79443
Chemical/Pharm GKB GenePA28453
Clinical trialFYCO1
Miscellaneous
canSAR (ICR)FYCO1 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFYCO1
EVEXFYCO1
GoPubMedFYCO1
iHOPFYCO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Mar 30 15:01:49 CEST 2017

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