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FYTTD1 (forty-two-three domain containing 1)

Identity

Alias_symbol (synonym)DKFZp761B1514
UIF
Other alias
HGNC (Hugo) FYTTD1
LocusID (NCBI) 84248
Atlas_Id 54320
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 197476424 and ends at 197511317 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AMPD1 (1p13.2) / FYTTD1 (3q29)FYTTD1 (3q29) / ALDH1A3 (15q26.3)FYTTD1 (3q29) / COL1A1 (17q21.33)
FYTTD1 (3q29) / DNAJC7 (17q21.2)FYTTD1 (3q29) / EIF4B (12q13.13)FYTTD1 (3q29) / IFIT1 (10q23.31)
GOLGA7 (8p11.21) / FYTTD1 (3q29)LRCH3 (3q29) / FYTTD1 (3q29)FYTTD1 3q29 / ALDH1A3 15q26.3
FYTTD1 3q29 / DNAJC7 17q21.2FYTTD1 3q29 / IFIT1 10q23.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)FYTTD1   25407
Cards
Entrez_Gene (NCBI)FYTTD1  84248  forty-two-three domain containing 1
AliasesUIF
GeneCards (Weizmann)FYTTD1
Ensembl hg19 (Hinxton)ENSG00000122068 [Gene_View]  chr3:197476424-197511317 [Contig_View]  FYTTD1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000122068 [Gene_View]  chr3:197476424-197511317 [Contig_View]  FYTTD1 [Vega]
ICGC DataPortalENSG00000122068
TCGA cBioPortalFYTTD1
AceView (NCBI)FYTTD1
Genatlas (Paris)FYTTD1
WikiGenes84248
SOURCE (Princeton)FYTTD1
Genetics Home Reference (NIH)FYTTD1
Genomic and cartography
GoldenPath hg19 (UCSC)FYTTD1  -     chr3:197476424-197511317 +  3q29   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FYTTD1  -     3q29   [Description]    (hg38-Dec_2013)
EnsemblFYTTD1 - 3q29 [CytoView hg19]  FYTTD1 - 3q29 [CytoView hg38]
Mapping of homologs : NCBIFYTTD1 [Mapview hg19]  FYTTD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ344094 AK027672 AK296283 AK302546 AK303462
RefSeq transcript (Entrez)NM_001011537 NM_032288
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929312
Consensus coding sequences : CCDS (NCBI)FYTTD1
Cluster EST : UnigeneHs.277533 [ NCBI ]
CGAP (NCI)Hs.277533
Alternative Splicing GalleryENSG00000122068
Gene ExpressionFYTTD1 [ NCBI-GEO ]   FYTTD1 [ EBI - ARRAY_EXPRESS ]   FYTTD1 [ SEEK ]   FYTTD1 [ MEM ]
Gene Expression Viewer (FireBrowse)FYTTD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84248
GTEX Portal (Tissue expression)FYTTD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96QD9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96QD9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96QD9
Splice isoforms : SwissVarQ96QD9
PhosPhoSitePlusQ96QD9
Domains : Interpro (EBI)FYTTD1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FYTTD1
DMDM Disease mutations84248
Blocks (Seattle)FYTTD1
SuperfamilyQ96QD9
Human Protein AtlasENSG00000122068
Peptide AtlasQ96QD9
HPRD10909
IPIIPI00289907   IPI00947128   IPI00927408   IPI00927445   IPI00926933   IPI00927182   IPI01012789   IPI01014249   
Protein Interaction databases
DIP (DOE-UCLA)Q96QD9
IntAct (EBI)Q96QD9
FunCoupENSG00000122068
BioGRIDFYTTD1
STRING (EMBL)FYTTD1
ZODIACFYTTD1
Ontologies - Pathways
QuickGOQ96QD9
Ontology : AmiGOmRNA binding  protein binding  nucleoplasm  mRNA export from nucleus  nuclear speck  poly(A) RNA binding  
Ontology : EGO-EBImRNA binding  protein binding  nucleoplasm  mRNA export from nucleus  nuclear speck  poly(A) RNA binding  
NDEx NetworkFYTTD1
Atlas of Cancer Signalling NetworkFYTTD1
Wikipedia pathwaysFYTTD1
Orthology - Evolution
OrthoDB84248
GeneTree (enSembl)ENSG00000122068
Phylogenetic Trees/Animal Genes : TreeFamFYTTD1
HOVERGENQ96QD9
HOGENOMQ96QD9
Homologs : HomoloGeneFYTTD1
Homology/Alignments : Family Browser (UCSC)FYTTD1
Gene fusions - Rearrangements
Fusion : MitelmanFYTTD1/ALDH1A3 [3q29/15q26.3]  
Fusion : MitelmanFYTTD1/DNAJC7 [3q29/17q21.2]  [t(3;17)(q29;q21)]  
Fusion : MitelmanFYTTD1/IFIT1 [3q29/10q23.31]  [t(3;10)(q29;q23)]  
Fusion: TCGAFYTTD1 3q29 ALDH1A3 15q26.3 LGG
Fusion: TCGAFYTTD1 3q29 DNAJC7 17q21.2 LUAD
Fusion: TCGAFYTTD1 3q29 IFIT1 10q23.31 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFYTTD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FYTTD1
dbVarFYTTD1
ClinVarFYTTD1
1000_GenomesFYTTD1 
Exome Variant ServerFYTTD1
ExAC (Exome Aggregation Consortium)FYTTD1 (select the gene name)
Genetic variants : HAPMAP84248
Genomic Variants (DGV)FYTTD1 [DGVbeta]
DECIPHER (Syndromes)3:197476424-197511317  ENSG00000122068
CONAN: Copy Number AnalysisFYTTD1 
Mutations
ICGC Data PortalFYTTD1 
TCGA Data PortalFYTTD1 
Broad Tumor PortalFYTTD1
OASIS PortalFYTTD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFYTTD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFYTTD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FYTTD1
DgiDB (Drug Gene Interaction Database)FYTTD1
DoCM (Curated mutations)FYTTD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FYTTD1 (select a term)
intoGenFYTTD1
Cancer3DFYTTD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFYTTD1
Genetic Testing Registry FYTTD1
NextProtQ96QD9 [Medical]
TSGene84248
GENETestsFYTTD1
Huge Navigator FYTTD1 [HugePedia]
snp3D : Map Gene to Disease84248
BioCentury BCIQFYTTD1
ClinGenFYTTD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84248
Chemical/Pharm GKB GenePA134946373
Clinical trialFYTTD1
Miscellaneous
canSAR (ICR)FYTTD1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFYTTD1
EVEXFYTTD1
GoPubMedFYTTD1
iHOPFYTTD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:01:50 CEST 2017

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