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FYTTD1 (forty-two-three domain containing 1)

Identity

Alias_symbol (synonym)DKFZp761B1514
UIF
Other alias
HGNC (Hugo) FYTTD1
LocusID (NCBI) 84248
Atlas_Id 54320
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 197749553 and ends at 197784446 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AMPD1 (1p13.2) / FYTTD1 (3q29)FYTTD1 (3q29) / ALDH1A3 (15q26.3)FYTTD1 (3q29) / COL1A1 (17q21.33)
FYTTD1 (3q29) / DNAJC7 (17q21.2)FYTTD1 (3q29) / EIF4B (12q13.13)FYTTD1 (3q29) / IFIT1 (10q23.31)
GOLGA7 (8p11.21) / FYTTD1 (3q29)LRCH3 (3q29) / FYTTD1 (3q29)FYTTD1 3q29 / ALDH1A3 15q26.3
FYTTD1 3q29 / DNAJC7 17q21.2FYTTD1 3q29 / IFIT1 10q23.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)FYTTD1   25407
Cards
Entrez_Gene (NCBI)FYTTD1  84248  forty-two-three domain containing 1
AliasesUIF
GeneCards (Weizmann)FYTTD1
Ensembl hg19 (Hinxton)ENSG00000122068 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122068 [Gene_View]  chr3:197749553-197784446 [Contig_View]  FYTTD1 [Vega]
ICGC DataPortalENSG00000122068
TCGA cBioPortalFYTTD1
AceView (NCBI)FYTTD1
Genatlas (Paris)FYTTD1
WikiGenes84248
SOURCE (Princeton)FYTTD1
Genetics Home Reference (NIH)FYTTD1
Genomic and cartography
GoldenPath hg38 (UCSC)FYTTD1  -     chr3:197749553-197784446 +  3q29   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FYTTD1  -     3q29   [Description]    (hg19-Feb_2009)
EnsemblFYTTD1 - 3q29 [CytoView hg19]  FYTTD1 - 3q29 [CytoView hg38]
Mapping of homologs : NCBIFYTTD1 [Mapview hg19]  FYTTD1 [Mapview hg38]
OMIM616933   
Gene and transcription
Genbank (Entrez)AJ344094 AK027672 AK296283 AK302546 AK303462
RefSeq transcript (Entrez)NM_001011537 NM_032288
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FYTTD1
Cluster EST : UnigeneHs.277533 [ NCBI ]
CGAP (NCI)Hs.277533
Alternative Splicing GalleryENSG00000122068
Gene ExpressionFYTTD1 [ NCBI-GEO ]   FYTTD1 [ EBI - ARRAY_EXPRESS ]   FYTTD1 [ SEEK ]   FYTTD1 [ MEM ]
Gene Expression Viewer (FireBrowse)FYTTD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84248
GTEX Portal (Tissue expression)FYTTD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96QD9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96QD9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96QD9
Splice isoforms : SwissVarQ96QD9
PhosPhoSitePlusQ96QD9
Domains : Interpro (EBI)FYTTD1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FYTTD1
DMDM Disease mutations84248
Blocks (Seattle)FYTTD1
SuperfamilyQ96QD9
Human Protein AtlasENSG00000122068
Peptide AtlasQ96QD9
HPRD10909
IPIIPI00289907   IPI00947128   IPI00927408   IPI00927445   IPI00926933   IPI00927182   IPI01012789   IPI01014249   
Protein Interaction databases
DIP (DOE-UCLA)Q96QD9
IntAct (EBI)Q96QD9
FunCoupENSG00000122068
BioGRIDFYTTD1
STRING (EMBL)FYTTD1
ZODIACFYTTD1
Ontologies - Pathways
QuickGOQ96QD9
Ontology : AmiGORNA binding  mRNA binding  protein binding  nucleoplasm  mRNA export from nucleus  nuclear speck  
Ontology : EGO-EBIRNA binding  mRNA binding  protein binding  nucleoplasm  mRNA export from nucleus  nuclear speck  
NDEx NetworkFYTTD1
Atlas of Cancer Signalling NetworkFYTTD1
Wikipedia pathwaysFYTTD1
Orthology - Evolution
OrthoDB84248
GeneTree (enSembl)ENSG00000122068
Phylogenetic Trees/Animal Genes : TreeFamFYTTD1
HOVERGENQ96QD9
HOGENOMQ96QD9
Homologs : HomoloGeneFYTTD1
Homology/Alignments : Family Browser (UCSC)FYTTD1