Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FZD9 (frizzled class receptor 9)

Identity

Alias_namesfrizzled (Drosophila) homolog 9
frizzled homolog 9 (Drosophila)
frizzled 9, seven transmembrane spanning receptor
frizzled family receptor 9
Alias_symbol (synonym)FZD3
CD349
Other alias
HGNC (Hugo) FZD9
LocusID (NCBI) 8326
Atlas_Id 40659
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 73433779 and ends at 73436120 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FZD9   4047
Cards
Entrez_Gene (NCBI)FZD9  8326  frizzled class receptor 9
AliasesCD349; FZD3
GeneCards (Weizmann)FZD9
Ensembl hg19 (Hinxton)ENSG00000188763 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188763 [Gene_View]  chr7:73433779-73436120 [Contig_View]  FZD9 [Vega]
ICGC DataPortalENSG00000188763
TCGA cBioPortalFZD9
AceView (NCBI)FZD9
Genatlas (Paris)FZD9
WikiGenes8326
SOURCE (Princeton)FZD9
Genetics Home Reference (NIH)FZD9
Genomic and cartography
GoldenPath hg38 (UCSC)FZD9  -     chr7:73433779-73436120 +  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FZD9  -     7q11.23   [Description]    (hg19-Feb_2009)
EnsemblFZD9 - 7q11.23 [CytoView hg19]  FZD9 - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBIFZD9 [Mapview hg19]  FZD9 [Mapview hg38]
OMIM601766   
Gene and transcription
Genbank (Entrez)BC026333 DQ893374 DQ896696 U82169
RefSeq transcript (Entrez)NM_003508
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FZD9
Cluster EST : UnigeneHs.647029 [ NCBI ]
CGAP (NCI)Hs.647029
Alternative Splicing GalleryENSG00000188763
Gene ExpressionFZD9 [ NCBI-GEO ]   FZD9 [ EBI - ARRAY_EXPRESS ]   FZD9 [ SEEK ]   FZD9 [ MEM ]
Gene Expression Viewer (FireBrowse)FZD9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8326
GTEX Portal (Tissue expression)FZD9
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00144   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00144  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00144
Splice isoforms : SwissVarO00144
PhosPhoSitePlusO00144
Domaine pattern : Prosite (Expaxy)FZ (PS50038)    G_PROTEIN_RECEP_F2_4 (PS50261)   
Domains : Interpro (EBI)Frizzled    Frizzled/SFRP    Frizzled_dom    GPCR_2-like   
Domain families : Pfam (Sanger)Frizzled (PF01534)    Fz (PF01392)   
Domain families : Pfam (NCBI)pfam01534    pfam01392   
Domain families : Smart (EMBL)FRI (SM00063)  Frizzled (SM01330)  
Conserved Domain (NCBI)FZD9
DMDM Disease mutations8326
Blocks (Seattle)FZD9
SuperfamilyO00144
Human Protein AtlasENSG00000188763
Peptide AtlasO00144
HPRD03460
IPIIPI00020230   
Protein Interaction databases
DIP (DOE-UCLA)O00144
IntAct (EBI)O00144
FunCoupENSG00000188763
BioGRIDFZD9
STRING (EMBL)FZD9
ZODIACFZD9
Ontologies - Pathways
QuickGOO00144
Ontology : AmiGOossification  release of cytochrome c from mitochondria  G-protein coupled receptor activity  cytoplasm  endoplasmic reticulum membrane  Golgi apparatus  plasma membrane  G-protein coupled receptor signaling pathway  nervous system development  neuroblast proliferation  learning or memory  cell surface  integral component of membrane  Wnt signaling pathway  Wnt-protein binding  B cell differentiation  positive regulation of bone mineralization  filopodium membrane  mitochondrial membrane  protein homodimerization activity  Wnt-activated receptor activity  positive regulation of apoptotic process  negative regulation of neuron apoptotic process  negative regulation of neuron apoptotic process  protein heterodimerization activity  perinuclear region of cytoplasm  regulation of cytosolic calcium ion concentration  negative regulation of mitochondrial depolarization  negative regulation of necroptotic process  negative regulation of cell cycle arrest  positive regulation of canonical Wnt signaling pathway  negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway  regulation of skeletal muscle acetylcholine-gated channel clustering  negative regulation of skeletal muscle acetylcholine-gated channel clustering  bone regeneration  positive regulation of neural precursor cell proliferation  
Ontology : EGO-EBIossification  release of cytochrome c from mitochondria  G-protein coupled receptor activity  cytoplasm  endoplasmic reticulum membrane  Golgi apparatus  plasma membrane  G-protein coupled receptor signaling pathway  nervous system development  neuroblast proliferation  learning or memory  cell surface  integral component of membrane  Wnt signaling pathway  Wnt-protein binding  B cell differentiation  positive regulation of bone mineralization  filopodium membrane  mitochondrial membrane  protein homodimerization activity  Wnt-activated receptor activity  positive regulation of apoptotic process  negative regulation of neuron apoptotic process  negative regulation of neuron apoptotic process  protein heterodimerization activity  perinuclear region of cytoplasm  regulation of cytosolic calcium ion concentration  negative regulation of mitochondrial depolarization  negative regulation of necroptotic process  negative regulation of cell cycle arrest  positive regulation of canonical Wnt signaling pathway  negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway  regulation of skeletal muscle acetylcholine-gated channel clustering  negative regulation of skeletal muscle acetylcholine-gated channel clustering  bone regeneration  positive regulation of neural precursor cell proliferation  
Pathways : KEGGWnt signaling pathway    Hippo signaling pathway    Melanogenesis    HTLV-I infection    Pathways in cancer    Proteoglycans in cancer    Basal cell carcinoma   
NDEx NetworkFZD9
Atlas of Cancer Signalling NetworkFZD9
Wikipedia pathwaysFZD9
Orthology - Evolution
OrthoDB8326
GeneTree (enSembl)ENSG00000188763
Phylogenetic Trees/Animal Genes : TreeFamFZD9
HOVERGENO00144
HOGENOMO00144
Homologs : HomoloGeneFZD9
Homology/Alignments : Family Browser (UCSC)FZD9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFZD9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FZD9
dbVarFZD9
ClinVarFZD9
1000_GenomesFZD9 
Exome Variant ServerFZD9
ExAC (Exome Aggregation Consortium)FZD9 (select the gene name)
Genetic variants : HAPMAP8326
Genomic Variants (DGV)FZD9 [DGVbeta]
DECIPHERFZD9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFZD9 
Mutations
ICGC Data PortalFZD9 
TCGA Data PortalFZD9 
Broad Tumor PortalFZD9
OASIS PortalFZD9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFZD9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFZD9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FZD9
DgiDB (Drug Gene Interaction Database)FZD9
DoCM (Curated mutations)FZD9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FZD9 (select a term)
intoGenFZD9
Cancer3DFZD9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601766   
Orphanet
MedgenFZD9
Genetic Testing Registry FZD9
NextProtO00144 [Medical]
TSGene8326
GENETestsFZD9
Target ValidationFZD9
Huge Navigator FZD9 [HugePedia]
snp3D : Map Gene to Disease8326
BioCentury BCIQFZD9
ClinGenFZD9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8326
Chemical/Pharm GKB GenePA28464
Clinical trialFZD9
Miscellaneous
canSAR (ICR)FZD9 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFZD9
EVEXFZD9
GoPubMedFZD9
iHOPFZD9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:01:39 CEST 2017

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