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GABARAPL3 (GABA(A) receptors associated protein like 3, pseudogene)

Identity

Alias_namesGABA(A) receptors associated protein like 3
GABA(A) receptors associated protein like 3 (pseudogene)
GABA(A) receptors associated protein like 3, pseudogene
Alias_symbol (synonym)ATG8D
Other alias
HGNC (Hugo) GABARAPL3
LocusID (NCBI) 23766
Atlas_Id 63643
Location 15q26.1  [Link to chromosome band 15q26]
Location_base_pair Starts at 90889763 and ends at 90892679 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GABARAPL3   4069
Cards
Entrez_Gene (NCBI)GABARAPL3  23766  GABA(A) receptors associated protein like 3, pseudogene
AliasesATG8D
GeneCards (Weizmann)GABARAPL3
Ensembl hg19 (Hinxton) [Gene_View]  chr15:90889763-90892679 [Contig_View]  GABARAPL3 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:90889763-90892679 [Contig_View]  GABARAPL3 [Vega]
TCGA cBioPortalGABARAPL3
AceView (NCBI)GABARAPL3
Genatlas (Paris)GABARAPL3
WikiGenes23766
SOURCE (Princeton)GABARAPL3
Genetics Home Reference (NIH)GABARAPL3
Genomic and cartography
GoldenPath hg19 (UCSC)GABARAPL3  -     chr15:90889763-90892679 -  15q26.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GABARAPL3  -     15q26.1   [Description]    (hg38-Dec_2013)
EnsemblGABARAPL3 - 15q26.1 [CytoView hg19]  GABARAPL3 - 15q26.1 [CytoView hg38]
Mapping of homologs : NCBIGABARAPL3 [Mapview hg19]  GABARAPL3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF180519
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000015 NC_018926 NG_005645 NT_010194 NW_004929399
Consensus coding sequences : CCDS (NCBI)GABARAPL3
Cluster EST : UnigeneHs.592014 [ NCBI ]
CGAP (NCI)Hs.592014
Gene ExpressionGABARAPL3 [ NCBI-GEO ]   GABARAPL3 [ EBI - ARRAY_EXPRESS ]   GABARAPL3 [ SEEK ]   GABARAPL3 [ MEM ]
Gene Expression Viewer (FireBrowse)GABARAPL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23766
GTEX Portal (Tissue expression)GABARAPL3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BY60   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BY60  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BY60
Splice isoforms : SwissVarQ9BY60
PhosPhoSitePlusQ9BY60
Domains : Interpro (EBI)Atg8_like    Ubiquitin-rel_dom   
Domain families : Pfam (Sanger)Atg8 (PF02991)   
Domain families : Pfam (NCBI)pfam02991   
Conserved Domain (NCBI)GABARAPL3
DMDM Disease mutations23766
Blocks (Seattle)GABARAPL3
SuperfamilyQ9BY60
Peptide AtlasQ9BY60
IPIIPI00000252   
Protein Interaction databases
DIP (DOE-UCLA)Q9BY60
IntAct (EBI)Q9BY60
BioGRIDGABARAPL3
STRING (EMBL)GABARAPL3
ZODIACGABARAPL3
Ontologies - Pathways
QuickGOQ9BY60
Ontology : AmiGOautophagosome assembly  pre-autophagosomal structure  autophagosome membrane  mitochondrion degradation  cytosol  microtubule  microtubule binding  extrinsic component of membrane  cytoplasmic vesicle  nucleophagy  GABA receptor binding  membrane fusion  
Ontology : EGO-EBIautophagosome assembly  pre-autophagosomal structure  autophagosome membrane  mitochondrion degradation  cytosol  microtubule  microtubule binding  extrinsic component of membrane  cytoplasmic vesicle  nucleophagy  GABA receptor binding  membrane fusion  
NDEx NetworkGABARAPL3
Atlas of Cancer Signalling NetworkGABARAPL3
Wikipedia pathwaysGABARAPL3
Orthology - Evolution
OrthoDB23766
Phylogenetic Trees/Animal Genes : TreeFamGABARAPL3
HOVERGENQ9BY60
HOGENOMQ9BY60
Homologs : HomoloGeneGABARAPL3
Homology/Alignments : Family Browser (UCSC)GABARAPL3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGABARAPL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GABARAPL3
dbVarGABARAPL3
ClinVarGABARAPL3
1000_GenomesGABARAPL3 
Exome Variant ServerGABARAPL3
ExAC (Exome Aggregation Consortium)GABARAPL3 (select the gene name)
Genetic variants : HAPMAP23766
Genomic Variants (DGV)GABARAPL3 [DGVbeta]
DECIPHER (Syndromes)15:90889763-90892679  
CONAN: Copy Number AnalysisGABARAPL3 
Mutations
ICGC Data PortalGABARAPL3 
TCGA Data PortalGABARAPL3 
Broad Tumor PortalGABARAPL3
OASIS PortalGABARAPL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGABARAPL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGABARAPL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GABARAPL3
DgiDB (Drug Gene Interaction Database)GABARAPL3
DoCM (Curated mutations)GABARAPL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GABARAPL3 (select a term)
intoGenGABARAPL3
Cancer3DGABARAPL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGABARAPL3
Genetic Testing Registry GABARAPL3
NextProtQ9BY60 [Medical]
TSGene23766
GENETestsGABARAPL3
Huge Navigator GABARAPL3 [HugePedia]
snp3D : Map Gene to Disease23766
BioCentury BCIQGABARAPL3
ClinGenGABARAPL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23766
Chemical/Pharm GKB GenePA28483
Clinical trialGABARAPL3
Miscellaneous
canSAR (ICR)GABARAPL3 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGABARAPL3
EVEXGABARAPL3
GoPubMedGABARAPL3
iHOPGABARAPL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:05:36 CET 2017

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