Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GABPB1-IT1 (GABPB1 intronic transcript)

Identity

Alias (NCBI)-
HGNC (Hugo) GABPB1-IT1
HGNC Alias symbFLJ10038
LocusID (NCBI) 55056
Atlas_Id 78946
Location 15q21.2  [Link to chromosome band 15q21]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)GABPB1-IT1   25469
Cards
Entrez_Gene (NCBI)GABPB1-IT1  55056  GABPB1 intronic transcript
Aliases
GeneCards (Weizmann)GABPB1-IT1
Ensembl hg19 (Hinxton)ENSG00000285410 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000285410 [Gene_View]  ENSG00000285410 [Sequence]  - [Contig_View]  GABPB1-IT1 [Vega]
ICGC DataPortalENSG00000285410
TCGA cBioPortalGABPB1-IT1
AceView (NCBI)GABPB1-IT1
Genatlas (Paris)GABPB1-IT1
WikiGenes55056
SOURCE (Princeton)GABPB1-IT1
Genetics Home Reference (NIH)GABPB1-IT1
Genomic and cartography
GoldenPath hg38 (UCSC)GABPB1-IT1  -  
GoldenPath hg19 (UCSC)GABPB1-IT1  -  
GoldenPathGABPB1-IT1 - [CytoView hg19]  GABPB1-IT1 - [CytoView hg38]
ImmunoBaseENSG00000285410
genome Data Viewer NCBIGABPB1-IT1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK000900 BC009935 BC068063
RefSeq transcript (Entrez)NM_017976
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GABPB1-IT1
Alternative Splicing GalleryENSG00000285410
Gene ExpressionGABPB1-IT1 [ NCBI-GEO ]   GABPB1-IT1 [ EBI - ARRAY_EXPRESS ]   GABPB1-IT1 [ SEEK ]   GABPB1-IT1 [ MEM ]
Gene Expression Viewer (FireBrowse)GABPB1-IT1 [ Firebrowse - Broad ]
GenevisibleExpression of GABPB1-IT1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55056
GTEX Portal (Tissue expression)GABPB1-IT1
Human Protein AtlasENSG00000285410-GABPB1-IT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GABPB1-IT1
DMDM Disease mutations55056
Blocks (Seattle)GABPB1-IT1
Human Protein Atlas [tissue]ENSG00000285410-GABPB1-IT1 [tissue]
Protein Interaction databases
FunCoupENSG00000285410
BioGRIDGABPB1-IT1
STRING (EMBL)GABPB1-IT1
ZODIACGABPB1-IT1
Ontologies - Pathways
Huge Navigator GABPB1-IT1 [HugePedia]
snp3D : Map Gene to Disease55056
BioCentury BCIQGABPB1-IT1
ClinGenGABPB1-IT1
Clinical trials, drugs, therapy
Protein Interactions : CTD55056
Clinical trialGABPB1-IT1
Miscellaneous
canSAR (ICR)GABPB1-IT1 (select the gene name)
HarmonizomeGABPB1-IT1
DataMed IndexGABPB1-IT1
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGABPB1-IT1
EVEXGABPB1-IT1
GoPubMedGABPB1-IT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Jul 16 15:56:31 CEST 2020

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