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GABPB2 (GA binding protein transcription factor, beta subunit 2)

Identity

Alias_symbol (synonym)MGC29891
Other alias-
HGNC (Hugo) GABPB2
LocusID (NCBI) 126626
Atlas_Id 63646
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 151043080 and ends at 151091007 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GABPB2 (1q21.3) / BNIPL (1q21.3)GABPB2 (1q21.3) / MLLT11 (1q21.3)PIP5K1A (1q21.3) / GABPB2 (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GABPB2   28441
Cards
Entrez_Gene (NCBI)GABPB2  126626  GA binding protein transcription factor, beta subunit 2
Aliases
GeneCards (Weizmann)GABPB2
Ensembl hg19 (Hinxton)ENSG00000143458 [Gene_View]  chr1:151043080-151091007 [Contig_View]  GABPB2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000143458 [Gene_View]  chr1:151043080-151091007 [Contig_View]  GABPB2 [Vega]
ICGC DataPortalENSG00000143458
TCGA cBioPortalGABPB2
AceView (NCBI)GABPB2
Genatlas (Paris)GABPB2
WikiGenes126626
SOURCE (Princeton)GABPB2
Genetics Home Reference (NIH)GABPB2
Genomic and cartography
GoldenPath hg19 (UCSC)GABPB2  -     chr1:151043080-151091007 +  1q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GABPB2  -     1q21.3   [Description]    (hg38-Dec_2013)
EnsemblGABPB2 - 1q21.3 [CytoView hg19]  GABPB2 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBIGABPB2 [Mapview hg19]  GABPB2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092230 AK301882 AK313606 BC027033
RefSeq transcript (Entrez)NM_144618
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)GABPB2
Cluster EST : UnigeneHs.654699 [ NCBI ]
CGAP (NCI)Hs.654699
Alternative Splicing GalleryENSG00000143458
Gene ExpressionGABPB2 [ NCBI-GEO ]   GABPB2 [ EBI - ARRAY_EXPRESS ]   GABPB2 [ SEEK ]   GABPB2 [ MEM ]
Gene Expression Viewer (FireBrowse)GABPB2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126626
GTEX Portal (Tissue expression)GABPB2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAK5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAK5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAK5
Splice isoforms : SwissVarQ8TAK5
PhosPhoSitePlusQ8TAK5
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    Ank_3 (PF13606)   
Domain families : Pfam (NCBI)pfam12796    pfam13606   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)GABPB2
DMDM Disease mutations126626
Blocks (Seattle)GABPB2
SuperfamilyQ8TAK5
Human Protein AtlasENSG00000143458
Peptide AtlasQ8TAK5
HPRD14536
IPIIPI00549882   IPI00910447   IPI00478555   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAK5
IntAct (EBI)Q8TAK5
FunCoupENSG00000143458
BioGRIDGABPB2
STRING (EMBL)GABPB2
ZODIACGABPB2
Ontologies - Pathways
QuickGOQ8TAK5
Ontology : AmiGOprotein binding  nucleus  transcription, DNA-templated  protein homodimerization activity  transcription regulatory region DNA binding  positive regulation of transcription from RNA polymerase II promoter  protein heterodimerization activity  
Ontology : EGO-EBIprotein binding  nucleus  transcription, DNA-templated  protein homodimerization activity  transcription regulatory region DNA binding  positive regulation of transcription from RNA polymerase II promoter  protein heterodimerization activity  
NDEx NetworkGABPB2
Atlas of Cancer Signalling NetworkGABPB2
Wikipedia pathwaysGABPB2
Orthology - Evolution
OrthoDB126626
GeneTree (enSembl)ENSG00000143458
Phylogenetic Trees/Animal Genes : TreeFamGABPB2
HOVERGENQ8TAK5
HOGENOMQ8TAK5
Homologs : HomoloGeneGABPB2
Homology/Alignments : Family Browser (UCSC)GABPB2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGABPB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GABPB2
dbVarGABPB2
ClinVarGABPB2
1000_GenomesGABPB2 
Exome Variant ServerGABPB2
ExAC (Exome Aggregation Consortium)GABPB2 (select the gene name)
Genetic variants : HAPMAP126626
Genomic Variants (DGV)GABPB2 [DGVbeta]
DECIPHER (Syndromes)1:151043080-151091007  ENSG00000143458
CONAN: Copy Number AnalysisGABPB2 
Mutations
ICGC Data PortalGABPB2 
TCGA Data PortalGABPB2 
Broad Tumor PortalGABPB2
OASIS PortalGABPB2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGABPB2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGABPB2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GABPB2
DgiDB (Drug Gene Interaction Database)GABPB2
DoCM (Curated mutations)GABPB2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GABPB2 (select a term)
intoGenGABPB2
Cancer3DGABPB2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGABPB2
Genetic Testing Registry GABPB2
NextProtQ8TAK5 [Medical]
TSGene126626
GENETestsGABPB2
Huge Navigator GABPB2 [HugePedia]
snp3D : Map Gene to Disease126626
BioCentury BCIQGABPB2
ClinGenGABPB2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126626
Chemical/Pharm GKB GenePA164741559
Clinical trialGABPB2
Miscellaneous
canSAR (ICR)GABPB2 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGABPB2
EVEXGABPB2
GoPubMedGABPB2
iHOPGABPB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:05:37 CET 2017

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