Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GABRG1 (gamma-aminobutyric acid (GABA) A receptor, gamma 1)

Identity

Alias_namesgamma-aminobutyric acid (GABA) A receptor, gamma 1
Other alias-
HGNC (Hugo) GABRG1
LocusID (NCBI) 2565
Atlas_Id 63654
Location 4p12  [Link to chromosome band 4p12]
Location_base_pair Starts at 46037787 and ends at 46126082 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GABRG1   4086
Cards
Entrez_Gene (NCBI)GABRG1  2565  gamma-aminobutyric acid (GABA) A receptor, gamma 1
Aliases
GeneCards (Weizmann)GABRG1
Ensembl hg19 (Hinxton)ENSG00000163285 [Gene_View]  chr4:46037787-46126082 [Contig_View]  GABRG1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000163285 [Gene_View]  chr4:46037787-46126082 [Contig_View]  GABRG1 [Vega]
ICGC DataPortalENSG00000163285
TCGA cBioPortalGABRG1
AceView (NCBI)GABRG1
Genatlas (Paris)GABRG1
WikiGenes2565
SOURCE (Princeton)GABRG1
Genetics Home Reference (NIH)GABRG1
Genomic and cartography
GoldenPath hg19 (UCSC)GABRG1  -     chr4:46037787-46126082 -  4p12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GABRG1  -     4p12   [Description]    (hg38-Dec_2013)
EnsemblGABRG1 - 4p12 [CytoView hg19]  GABRG1 - 4p12 [CytoView hg38]
Mapping of homologs : NCBIGABRG1 [Mapview hg19]  GABRG1 [Mapview hg38]
OMIM137166   
Gene and transcription
Genbank (Entrez)AK122845 AK124800 AK289806 AK299884 BC031087
RefSeq transcript (Entrez)NM_173536
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006238 NW_004929317
Consensus coding sequences : CCDS (NCBI)GABRG1
Cluster EST : UnigeneHs.375051 [ NCBI ]
CGAP (NCI)Hs.375051
Alternative Splicing GalleryENSG00000163285
Gene ExpressionGABRG1 [ NCBI-GEO ]   GABRG1 [ EBI - ARRAY_EXPRESS ]   GABRG1 [ SEEK ]   GABRG1 [ MEM ]
Gene Expression Viewer (FireBrowse)GABRG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2565
GTEX Portal (Tissue expression)GABRG1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N1C3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N1C3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N1C3
Splice isoforms : SwissVarQ8N1C3
PhosPhoSitePlusQ8N1C3
Domaine pattern : Prosite (Expaxy)NEUROTR_ION_CHANNEL (PS00236)   
Domains : Interpro (EBI)GABAA/Glycine_rcpt    GABBAg1_rcpt    GABBAg_rcpt    Neur_chan_lig-bd    Neur_channel    Neurotrans-gated_channel_TM    Neurotransmitter_ion_chnl_CS   
Domain families : Pfam (Sanger)Neur_chan_LBD (PF02931)    Neur_chan_memb (PF02932)   
Domain families : Pfam (NCBI)pfam02931    pfam02932   
Conserved Domain (NCBI)GABRG1
DMDM Disease mutations2565
Blocks (Seattle)GABRG1
SuperfamilyQ8N1C3
Human Protein AtlasENSG00000163285
Peptide AtlasQ8N1C3
HPRD15923
IPIIPI00166138   IPI01014740   
Protein Interaction databases
DIP (DOE-UCLA)Q8N1C3
IntAct (EBI)Q8N1C3
FunCoupENSG00000163285
BioGRIDGABRG1
STRING (EMBL)GABRG1
ZODIACGABRG1
Ontologies - Pathways
QuickGOQ8N1C3
Ontology : AmiGOGABA-A receptor activity  extracellular ligand-gated ion channel activity  chloride channel activity  gamma-aminobutyric acid signaling pathway  synaptic transmission  cell junction  chloride channel complex  receptor complex  postsynaptic membrane  GABA receptor binding  chloride transmembrane transport  
Ontology : EGO-EBIGABA-A receptor activity  extracellular ligand-gated ion channel activity  chloride channel activity  gamma-aminobutyric acid signaling pathway  synaptic transmission  cell junction  chloride channel complex  receptor complex  postsynaptic membrane  GABA receptor binding  chloride transmembrane transport  
Pathways : KEGGNeuroactive ligand-receptor interaction    Retrograde endocannabinoid signaling    GABAergic synapse    Morphine addiction    Nicotine addiction   
NDEx NetworkGABRG1
Atlas of Cancer Signalling NetworkGABRG1
Wikipedia pathwaysGABRG1
Orthology - Evolution
OrthoDB2565
GeneTree (enSembl)ENSG00000163285
Phylogenetic Trees/Animal Genes : TreeFamGABRG1
HOVERGENQ8N1C3
HOGENOMQ8N1C3
Homologs : HomoloGeneGABRG1
Homology/Alignments : Family Browser (UCSC)GABRG1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGABRG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GABRG1
dbVarGABRG1
ClinVarGABRG1
1000_GenomesGABRG1 
Exome Variant ServerGABRG1
ExAC (Exome Aggregation Consortium)GABRG1 (select the gene name)
Genetic variants : HAPMAP2565
Genomic Variants (DGV)GABRG1 [DGVbeta]
DECIPHER (Syndromes)4:46037787-46126082  ENSG00000163285
CONAN: Copy Number AnalysisGABRG1 
Mutations
ICGC Data PortalGABRG1 
TCGA Data PortalGABRG1 
Broad Tumor PortalGABRG1
OASIS PortalGABRG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGABRG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGABRG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GABRG1
DgiDB (Drug Gene Interaction Database)GABRG1
DoCM (Curated mutations)GABRG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GABRG1 (select a term)
intoGenGABRG1
Cancer3DGABRG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM137166   
Orphanet
MedgenGABRG1
Genetic Testing Registry GABRG1
NextProtQ8N1C3 [Medical]
TSGene2565
GENETestsGABRG1
Huge Navigator GABRG1 [HugePedia]
snp3D : Map Gene to Disease2565
BioCentury BCIQGABRG1
ClinGenGABRG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2565
Chemical/Pharm GKB GenePA28500
Clinical trialGABRG1
Miscellaneous
canSAR (ICR)GABRG1 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGABRG1
EVEXGABRG1
GoPubMedGABRG1
iHOPGABRG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:05:38 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.