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GABRP (gamma-aminobutyric acid (GABA) A receptor, pi)

Identity

Other names-
HGNC (Hugo) GABRP
LocusID (NCBI) 2568
Location 5q35.1
Location_base_pair Starts at 170210723 and ends at 170241050 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GABRP   4089
Cards
Entrez_Gene (NCBI)GABRP  2568  gamma-aminobutyric acid (GABA) A receptor, pi
GeneCards (Weizmann)GABRP
Ensembl (Hinxton)ENSG00000094755 [Gene_View]  chr5:170210723-170241050 [Contig_View]  GABRP [Vega]
ICGC DataPortalENSG00000094755
cBioPortalGABRP
AceView (NCBI)GABRP
Genatlas (Paris)GABRP
WikiGenes2568
SOURCE (Princeton)NM_001291985 NM_014211
Genomic and cartography
GoldenPath (UCSC)GABRP  -  5q35.1   chr5:170210723-170241050 +  5q35.1   [Description]    (hg19-Feb_2009)
EnsemblGABRP - 5q35.1 [CytoView]
Mapping of homologs : NCBIGABRP [Mapview]
OMIM602729   
Gene and transcription
Genbank (Entrez)AK055205 AK292901 AK296805 AK300303 AL708685
RefSeq transcript (Entrez)NM_001291985 NM_014211
RefSeq genomic (Entrez)AC_000137 NC_000005 NC_018916 NT_023133 NW_001838954 NW_004929325
Consensus coding sequences : CCDS (NCBI)GABRP
Cluster EST : UnigeneHs.26225 [ NCBI ]
CGAP (NCI)Hs.26225
Alternative Splicing : Fast-db (Paris)GSHG0024457
Alternative Splicing GalleryENSG00000094755
Gene ExpressionGABRP [ NCBI-GEO ]     GABRP [ SEEK ]   GABRP [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00591 (Uniprot)
NextProtO00591  [Medical]
With graphics : InterProO00591
Splice isoforms : SwissVarO00591 (Swissvar)
Domaine pattern : Prosite (Expaxy)NEUROTR_ION_CHANNEL (PS00236)   
Domains : Interpro (EBI)GABAA/Glycine_rcpt [organisation]   GABAAp_rcpt [organisation]   Neur_chan_lig-bd [organisation]   Neur_channel [organisation]   Neurotrans-gated_channel_TM [organisation]   Neurotransmitter_ion_chnl_CS [organisation]  
Related proteins : CluSTrO00591
Domain families : Pfam (Sanger)Neur_chan_LBD (PF02931)    Neur_chan_memb (PF02932)   
Domain families : Pfam (NCBI)pfam02931    pfam02932   
DMDM Disease mutations2568
Blocks (Seattle)O00591
Human Protein AtlasENSG00000094755 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasO00591
HPRD04105
IPIIPI00012181   IPI00902974   IPI00980228   IPI00979633   IPI00976437   IPI00982529   IPI00978232   IPI00981968   IPI00978836   
Protein Interaction databases
DIP (DOE-UCLA)O00591
IntAct (EBI)O00591
FunCoupENSG00000094755
BioGRIDGABRP
InParanoidO00591
Interologous Interaction database O00591
IntegromeDBGABRP
STRING (EMBL)GABRP
Ontologies - Pathways
Ontology : AmiGOGABA-A receptor activity  extracellular ligand-gated ion channel activity  chloride channel activity  signal transduction  signal transduction  cell junction  chloride channel complex  postsynaptic membrane  chloride transmembrane transport  
Ontology : EGO-EBIGABA-A receptor activity  extracellular ligand-gated ion channel activity  chloride channel activity  signal transduction  signal transduction  cell junction  chloride channel complex  postsynaptic membrane  chloride transmembrane transport  
Pathways : KEGGNeuroactive ligand-receptor interaction    Retrograde endocannabinoid signaling    GABAergic synapse    Morphine addiction    Nicotine addiction   
Protein Interaction DatabaseGABRP
Wikipedia pathwaysGABRP
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)GABRP
snp3D : Map Gene to Disease2568
SNP (GeneSNP Utah)GABRP
SNP : HGBaseGABRP
Genetic variants : HAPMAPGABRP
Exome VariantGABRP
1000_GenomesGABRP 
ICGC programENSG00000094755 
Somatic Mutations in Cancer : COSMICGABRP 
CONAN: Copy Number AnalysisGABRP 
Mutations and Diseases : HGMDGABRP
Mutations and Diseases : intOGenGABRP
Genomic VariantsGABRP  GABRP [DGVbeta]
dbVarGABRP
ClinVarGABRP
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM602729   
MedgenGABRP
GENETestsGABRP
Disease Genetic AssociationGABRP
Huge Navigator GABRP [HugePedia]  GABRP [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneGABRP
Homology/Alignments : Family Browser (UCSC)GABRP
Phylogenetic Trees/Animal Genes : TreeFamGABRP
Chemical/Protein Interactions : CTD2568
Chemical/Pharm GKB GenePA28503
Clinical trialGABRP
Cancer Resource (Charite)ENSG00000094755
Other databases
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
CoreMineGABRP
iHOPGABRP
OncoSearchGABRP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 18:52:28 CEST 2014

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