Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GABRP (gamma-aminobutyric acid (GABA) A receptor, pi)

Identity

Other names-
HGNC (Hugo) GABRP
LocusID (NCBI) 2568
Location 5q35.1
Location_base_pair Starts at 170210723 and ends at 170241050 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GABRP   4089
Entrez_Gene (NCBI)GABRP  2568  gamma-aminobutyric acid (GABA) A receptor, pi
Cards
GeneCards (Weizmann)GABRP
Ensembl (Hinxton)ENSG00000094755 [Gene_View]  chr5:170210723-170241050 [Contig_View]  GABRP [Vega]
AceView (NCBI)GABRP
Genatlas (Paris)GABRP
SOURCE (Stanford)NM_014211
Genomic and cartography
GoldenPath (UCSC)GABRP  -  5q35.1   chr5:170210723-170241050 +  5q35.1   [Description]    (hg19-Feb_2009)
EnsemblGABRP - 5q35.1 [CytoView]
Mapping of homologs : NCBIGABRP [Mapview]
OMIM602729   
Gene and transcription
Genbank (Entrez)AK055205 AK292901 AK296805 AK300303 AL708685
RefSeq transcript (SRS)NM_014211
RefSeq transcript (Entrez)NM_014211
RefSeq genomic (SRS)AC_000137 NC_000005 NC_018916 NT_023133 NW_001838954 NW_004078025
RefSeq genomic (Entrez)AC_000137 NC_000005 NC_018916 NT_023133 NW_001838954 NW_004078025
Consensus coding sequences : CCDS (NCBI)GABRP
Cluster EST : UnigeneHs.26225 [ SRS ] Hs.26225 [ NCBI ]
CGAP (NCI)Hs.26225
Alternative Splicing : Fast-db (Paris)GSHG0024457
Alternative Splicing GalleryENSG00000094755
Gene ExpressionGABRP [ NCBI-GEO ]   GABRP [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00591 (SRS) O00591 (Uniprot)
NextProtO00591
With graphics : InterProO00591
Splice isoforms : SwissVarO00591(Swissvar)
Domaine pattern : Prosite (SRS)NEUROTR_ION_CHANNEL (PS00236)   
Domaine pattern : Prosite (Expaxy)NEUROTR_ION_CHANNEL (PS00236)   
Domains : Interpro (SRS)GABAA_rcpt    GABAAp_rcpt    Neur_chan_lig-bd    Neur_channel    Neurotrans-gated_channel_TM    Neurotransmitter_ion_chnl_CS   
Domains : Interpro (EBI)GABAA_rcpt    GABAAp_rcpt    Neur_chan_lig-bd    Neur_channel    Neurotrans-gated_channel_TM    Neurotransmitter_ion_chnl_CS   
Related proteins : CluSTrO00591
Domain families : Pfam (SRS)Neur_chan_LBD (PF02931)    Neur_chan_memb (PF02932)   
Domain families : Pfam (Sanger)Neur_chan_LBD (PF02931)    Neur_chan_memb (PF02932)   
Domain families : Pfam (NCBI)pfam02931    pfam02932   
DMDM2568
Blocks (Seattle)O00591
Human Protein AtlasENSG00000094755
HPRD04105
IPIIPI00012181   IPI00902974   IPI00980228   IPI00979633   IPI00976437   IPI00982529   IPI00978232   IPI00981968   IPI00978836   
Protein Interaction databases
DIP (DOE-UCLA)O00591
IntAct (EBI)O00591
FunCoupENSG00000094755
REACTOMEGABRP
Protein Interaction Database2568
BioGRIDGABRP
InParanoidO00591
Interologous Interaction database O00591
IntegromeDBGABRP
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)GABRP
SNP (GeneSNP Utah)GABRP
SNP : HGBaseGABRP
Genetic variants : HAPMAPGABRP
Somatic Mutations in Cancer : COSMICGABRP 
CONAN: Copy Number AnalysisGABRP 
Mutations and Diseases : HGMDGABRP
OMIM602729   
GENETests602729   
Disease Genetic AssociationGABRP
Huge Navigator GABRP [HugePedia]  GABRP [HugeCancerGEM]
Genomic VariantsGABRP  GABRP [DGVbeta]
snp3D : Map Gene to Disease2568
General knowledge
Homologs : HomoloGeneGABRP
Homology/Alignments : Family Browser (UCSC)GABRP
Phylogenetic Trees/Animal Genes : TreeFamGABRP
Chemical/Protein Interactions : CTD2568
Chemical/Pharm GKB GenePA28503
Clinical trialGABRP
Cancer Resource (Charite)ENSG00000094755
Ontology : AmiGOGABA-A receptor activity  extracellular ligand-gated ion channel activity  chloride channel activity  plasma membrane  cell junction  chloride channel complex  postsynaptic membrane  
Ontology : EGO-EBIGABA-A receptor activity  extracellular ligand-gated ion channel activity  chloride channel activity  plasma membrane  cell junction  chloride channel complex  postsynaptic membrane  
Pathways : KEGGNeuroactive ligand-receptor interaction
Other databases
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
PubGeneGABRP
iHOPGABRP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:34:10 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.