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GABRP (gamma-aminobutyric acid type A receptor pi subunit)

Identity

Other names-
HGNC (Hugo) GABRP
LocusID (NCBI) 2568
Atlas_Id 40665
Location 5q35.1
Location_base_pair Starts at 170210723 and ends at 170241050 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GABRP (5q35.1) / TCF25 (16q24.3)RANBP17 (5q35.1) / GABRP (5q35.1)RANBP17 5q35.1 / GABRP 5q35.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GABRP   4089
Cards
Entrez_Gene (NCBI)GABRP  2568  gamma-aminobutyric acid type A receptor pi subunit
Aliases
GeneCards (Weizmann)GABRP
Ensembl hg19 (Hinxton)ENSG00000094755 [Gene_View]  chr5:170210723-170241050 [Contig_View]  GABRP [Vega]
Ensembl hg38 (Hinxton)ENSG00000094755 [Gene_View]  chr5:170210723-170241050 [Contig_View]  GABRP [Vega]
ICGC DataPortalENSG00000094755
TCGA cBioPortalGABRP
AceView (NCBI)GABRP
Genatlas (Paris)GABRP
WikiGenes2568
SOURCE (Princeton)GABRP
Genomic and cartography
GoldenPath hg19 (UCSC)GABRP  -     chr5:170210723-170241050 +  5q35.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GABRP  -     5q35.1   [Description]    (hg38-Dec_2013)
EnsemblGABRP - 5q35.1 [CytoView hg19]  GABRP - 5q35.1 [CytoView hg38]
Mapping of homologs : NCBIGABRP [Mapview hg19]  GABRP [Mapview hg38]
OMIM602729   
Gene and transcription
Genbank (Entrez)AK055205 AK292901 AK296805 AK300303 AL708685
RefSeq transcript (Entrez)NM_001291985 NM_014211
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_023133 NW_004929325
Consensus coding sequences : CCDS (NCBI)GABRP
Cluster EST : UnigeneHs.26225 [ NCBI ]
CGAP (NCI)Hs.26225
Alternative Splicing GalleryENSG00000094755
Gene ExpressionGABRP [ NCBI-GEO ]   GABRP [ EBI - ARRAY_EXPRESS ]   GABRP [ SEEK ]   GABRP [ MEM ]
Gene Expression Viewer (FireBrowse)GABRP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2568
GTEX Portal (Tissue expression)GABRP
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00591 (Uniprot)
NextProtO00591  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00591
Splice isoforms : SwissVarO00591 (Swissvar)
PhosPhoSitePlusO00591
Domaine pattern : Prosite (Expaxy)NEUROTR_ION_CHANNEL (PS00236)   
Domains : Interpro (EBI)GABAA/Glycine_rcpt    GABAAp_rcpt    Neur_chan_lig-bd    Neur_channel    Neurotrans-gated_channel_TM    Neurotransmitter_ion_chnl_CS   
Domain families : Pfam (Sanger)Neur_chan_LBD (PF02931)    Neur_chan_memb (PF02932)   
Domain families : Pfam (NCBI)pfam02931    pfam02932   
DMDM Disease mutations2568
Blocks (Seattle)GABRP
SuperfamilyO00591
Human Protein AtlasENSG00000094755
Peptide AtlasO00591
HPRD04105
IPIIPI00012181   IPI00902974   IPI00980228   IPI00979633   IPI00976437   IPI00982529   IPI00978232   IPI00981968   IPI00978836   
Protein Interaction databases
DIP (DOE-UCLA)O00591
IntAct (EBI)O00591
FunCoupENSG00000094755
BioGRIDGABRP
STRING (EMBL)GABRP
ZODIACGABRP
Ontologies - Pathways
QuickGOO00591
Ontology : AmiGOGABA-A receptor activity  signal transduction  signal transduction  extracellular-glutamate-gated chloride channel activity  cell junction  chloride channel complex  postsynaptic membrane  chloride transmembrane transport  chloride transmembrane transport  
Ontology : EGO-EBIGABA-A receptor activity  signal transduction  signal transduction  extracellular-glutamate-gated chloride channel activity  cell junction  chloride channel complex  postsynaptic membrane  chloride transmembrane transport  chloride transmembrane transport  
Pathways : KEGGNeuroactive ligand-receptor interaction    Retrograde endocannabinoid signaling    GABAergic synapse    Morphine addiction    Nicotine addiction   
NDEx Network
Atlas of Cancer Signalling NetworkGABRP
Wikipedia pathwaysGABRP
Orthology - Evolution
OrthoDB2568
GeneTree (enSembl)ENSG00000094755
Phylogenetic Trees/Animal Genes : TreeFamGABRP
Homologs : HomoloGeneGABRP
Homology/Alignments : Family Browser (UCSC)GABRP
Gene fusions - Rearrangements
Fusion: TCGARANBP17 5q35.1 GABRP 5q35.1 LUAD
Polymorphisms : SNP, variants
NCBI Variation ViewerGABRP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GABRP
dbVarGABRP
ClinVarGABRP
1000_GenomesGABRP 
Exome Variant ServerGABRP
ExAC (Exome Aggregation Consortium)GABRP (select the gene name)
Genetic variants : HAPMAP2568
Genomic Variants (DGV)GABRP [DGVbeta]
Mutations
ICGC Data PortalGABRP 
TCGA Data PortalGABRP 
Broad Tumor PortalGABRP
OASIS PortalGABRP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGABRP 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GABRP
DgiDB (Drug Gene Interaction Database)GABRP
DoCM (Curated mutations)GABRP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GABRP (select a term)
intoGenGABRP
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)5:170210723-170241050  ENSG00000094755
CONAN: Copy Number AnalysisGABRP 
Mutations and Diseases : HGMDGABRP
OMIM602729   
MedgenGABRP
Genetic Testing Registry GABRP
NextProtO00591 [Medical]
TSGene2568
GENETestsGABRP
Huge Navigator GABRP [HugePedia]
snp3D : Map Gene to Disease2568
BioCentury BCIQGABRP
ClinGenGABRP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2568
Chemical/Pharm GKB GenePA28503
Clinical trialGABRP
Miscellaneous
canSAR (ICR)GABRP (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGABRP
EVEXGABRP
GoPubMedGABRP
iHOPGABRP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat May 28 11:03:29 CEST 2016

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