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GABRR3 (gamma-aminobutyric acid type A receptor rho3 subunit (gene/pseudogene))

Identity

Alias_namesgamma-aminobutyric acid (GABA) receptor, rho 3
gamma-aminobutyric acid (GABA) A receptor, rho 3
gamma-aminobutyric acid (GABA) A receptor, rho 3 (gene/pseudogene)
Other alias-
HGNC (Hugo) GABRR3
LocusID (NCBI) 200959
Atlas_Id 63658
Location 3q11.2  [Link to chromosome band 3q11]
Location_base_pair Starts at 97986683 and ends at 98035304 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GABRR3   17969
Cards
Entrez_Gene (NCBI)GABRR3  200959  gamma-aminobutyric acid type A receptor rho3 subunit (gene/pseudogene)
Aliases
GeneCards (Weizmann)GABRR3
Ensembl hg19 (Hinxton)ENSG00000183185 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183185 [Gene_View]  chr3:97986683-98035304 [Contig_View]  GABRR3 [Vega]
ICGC DataPortalENSG00000183185
TCGA cBioPortalGABRR3
AceView (NCBI)GABRR3
Genatlas (Paris)GABRR3
WikiGenes200959
SOURCE (Princeton)GABRR3
Genetics Home Reference (NIH)GABRR3
Genomic and cartography
GoldenPath hg38 (UCSC)GABRR3  -     chr3:97986683-98035304 -  3q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GABRR3  -     3q11.2   [Description]    (hg19-Feb_2009)
EnsemblGABRR3 - 3q11.2 [CytoView hg19]  GABRR3 - 3q11.2 [CytoView hg38]
Mapping of homologs : NCBIGABRR3 [Mapview hg19]  GABRR3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)CR749263
RefSeq transcript (Entrez)NM_001105580
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GABRR3
Cluster EST : UnigeneHs.534578 [ NCBI ]
CGAP (NCI)Hs.534578
Alternative Splicing GalleryENSG00000183185
Gene ExpressionGABRR3 [ NCBI-GEO ]   GABRR3 [ EBI - ARRAY_EXPRESS ]   GABRR3 [ SEEK ]   GABRR3 [ MEM ]
Gene Expression Viewer (FireBrowse)GABRR3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200959
GTEX Portal (Tissue expression)GABRR3
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MPY1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MPY1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MPY1
Splice isoforms : SwissVarA8MPY1
PhosPhoSitePlusA8MPY1
Domaine pattern : Prosite (Expaxy)NEUROTR_ION_CHANNEL (PS00236)   
Domains : Interpro (EBI)GABAA/Glycine_rcpt    Neur_chan_lig-bd    Neur_channel    Neurotrans-gated_channel_TM    Neurotransmitter_ion_chnl_CS   
Domain families : Pfam (Sanger)Neur_chan_LBD (PF02931)    Neur_chan_memb (PF02932)   
Domain families : Pfam (NCBI)pfam02931    pfam02932   
Conserved Domain (NCBI)GABRR3
DMDM Disease mutations200959
Blocks (Seattle)GABRR3
SuperfamilyA8MPY1
Human Protein AtlasENSG00000183185
Peptide AtlasA8MPY1
IPIIPI00879466   
Protein Interaction databases
DIP (DOE-UCLA)A8MPY1
IntAct (EBI)A8MPY1
FunCoupENSG00000183185
BioGRIDGABRR3
STRING (EMBL)GABRR3
ZODIACGABRR3
Ontologies - Pathways
QuickGOA8MPY1
Ontology : AmiGOGABA-A receptor activity  GABA-A receptor activity  extracellular ligand-gated ion channel activity  chloride channel activity  cellular_component  plasma membrane  gamma-aminobutyric acid signaling pathway  chemical synaptic transmission  protein domain specific binding  cell junction  ion transmembrane transport  chloride channel complex  postsynaptic membrane  chloride transmembrane transport  GABA-A receptor complex  
Ontology : EGO-EBIGABA-A receptor activity  GABA-A receptor activity  extracellular ligand-gated ion channel activity  chloride channel activity  cellular_component  plasma membrane  gamma-aminobutyric acid signaling pathway  chemical synaptic transmission  protein domain specific binding  cell junction  ion transmembrane transport  chloride channel complex  postsynaptic membrane  chloride transmembrane transport  GABA-A receptor complex  
Pathways : KEGGNeuroactive ligand-receptor interaction    Retrograde endocannabinoid signaling    GABAergic synapse    Morphine addiction    Nicotine addiction   
NDEx NetworkGABRR3
Atlas of Cancer Signalling NetworkGABRR3
Wikipedia pathwaysGABRR3
Orthology - Evolution
OrthoDB200959
GeneTree (enSembl)ENSG00000183185
Phylogenetic Trees/Animal Genes : TreeFamGABRR3
HOVERGENA8MPY1
HOGENOMA8MPY1
Homologs : HomoloGeneGABRR3
Homology/Alignments : Family Browser (UCSC)GABRR3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGABRR3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GABRR3
dbVarGABRR3
ClinVarGABRR3
1000_GenomesGABRR3 
Exome Variant ServerGABRR3
ExAC (Exome Aggregation Consortium)GABRR3 (select the gene name)
Genetic variants : HAPMAP200959
Genomic Variants (DGV)GABRR3 [DGVbeta]
DECIPHERGABRR3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGABRR3 
Mutations
ICGC Data PortalGABRR3 
TCGA Data PortalGABRR3 
Broad Tumor PortalGABRR3
OASIS PortalGABRR3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGABRR3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGABRR3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GABRR3
DgiDB (Drug Gene Interaction Database)GABRR3
DoCM (Curated mutations)GABRR3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GABRR3 (select a term)
intoGenGABRR3
Cancer3DGABRR3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGABRR3
Genetic Testing Registry GABRR3
NextProtA8MPY1 [Medical]
TSGene200959
GENETestsGABRR3
Target ValidationGABRR3
Huge Navigator GABRR3 [HugePedia]
snp3D : Map Gene to Disease200959
BioCentury BCIQGABRR3
ClinGenGABRR3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200959
Chemical/Pharm GKB GenePA134952133
Clinical trialGABRR3
Miscellaneous
canSAR (ICR)GABRR3 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGABRR3
EVEXGABRR3
GoPubMedGABRR3
iHOPGABRR3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:05 CEST 2017

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