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GACAT1 (gastric cancer associated transcript 1)

Identity

Alias (NCBI)LINC00876
HGNC (Hugo) GACAT1
HGNC Alias symbLINC00876
AC096655.1-002
HGNC Alias namelong intergenic non-protein coding RNA 876
HGNC Previous namegastric cancer associated transcript 1 (non-protein coding)
LocusID (NCBI) 104326057
Atlas_Id 54953
Location 2q12.3  [Link to chromosome band 2q12]
Location_base_pair Starts at 107754112 and ends at 107822129 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)GACAT1   48336
Cards
Entrez_Gene (NCBI)GACAT1    gastric cancer associated transcript 1
AliasesLINC00876
GeneCards (Weizmann)GACAT1
Ensembl hg19 (Hinxton)ENSG00000232991 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000232991 [Gene_View]  ENSG00000232991 [Sequence]  chr2:107754112-107822129 [Contig_View]  GACAT1 [Vega]
ICGC DataPortalENSG00000232991
TCGA cBioPortalGACAT1
AceView (NCBI)GACAT1
Genatlas (Paris)GACAT1
SOURCE (Princeton)GACAT1
Genetics Home Reference (NIH)GACAT1
Genomic and cartography
GoldenPath hg38 (UCSC)GACAT1  -     chr2:107754112-107822129 +  2q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GACAT1  -     2q12.3   [Description]    (hg19-Feb_2009)
GoldenPathGACAT1 - 2q12.3 [CytoView hg19]  GACAT1 - 2q12.3 [CytoView hg38]
ImmunoBaseENSG00000232991
Genome Data Viewer NCBIGACAT1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)DB077273 DB096621
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)GACAT1
Gene ExpressionGACAT1 [ NCBI-GEO ]   GACAT1 [ EBI - ARRAY_EXPRESS ]   GACAT1 [ SEEK ]   GACAT1 [ MEM ]
Gene Expression Viewer (FireBrowse)GACAT1 [ Firebrowse - Broad ]
GenevisibleExpression of GACAT1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)104326057
GTEX Portal (Tissue expression)GACAT1
Human Protein AtlasENSG00000232991-GACAT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GACAT1
Human Protein Atlas [tissue]ENSG00000232991-GACAT1 [tissue]
Protein Interaction databases
BioGRIDGACAT1
STRING (EMBL)GACAT1
ZODIACGACAT1
Ontologies - Pathways
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGACAT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:10:14 CEST 2021

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