Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GACAT1 (gastric cancer associated transcript 1 (non-protein coding))

Identity

Alias_symbol (synonym)LINC00876
AC096655.1-002
Other alias
HGNC (Hugo) GACAT1
LocusID (NCBI) 104326057
Atlas_Id 54953
Location 2q12.3  [Link to chromosome band 2q12]
Location_base_pair Starts at 108370568 and ends at 108428804 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GACAT1   48336
Cards
Entrez_Gene (NCBI)GACAT1  104326057  gastric cancer associated transcript 1 (non-protein coding)
AliasesLINC00876
GeneCards (Weizmann)GACAT1
Ensembl hg19 (Hinxton)ENSG00000232991 [Gene_View]  chr2:108370568-108428804 [Contig_View]  GACAT1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000232991 [Gene_View]  chr2:108370568-108428804 [Contig_View]  GACAT1 [Vega]
ICGC DataPortalENSG00000232991
TCGA cBioPortalGACAT1
AceView (NCBI)GACAT1
Genatlas (Paris)GACAT1
WikiGenes104326057
SOURCE (Princeton)GACAT1
Genetics Home Reference (NIH)GACAT1
Genomic and cartography
GoldenPath hg19 (UCSC)GACAT1  -     chr2:108370568-108428804 +  2q12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GACAT1  -     2q12.3   [Description]    (hg38-Dec_2013)
EnsemblGACAT1 - 2q12.3 [CytoView hg19]  GACAT1 - 2q12.3 [CytoView hg38]
Mapping of homologs : NCBIGACAT1 [Mapview hg19]  GACAT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DB077273 DB096621 HG494442 HG494443
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929303
Consensus coding sequences : CCDS (NCBI)GACAT1
Cluster EST : UnigeneHs.585967 [ NCBI ]
CGAP (NCI)Hs.585967
Alternative Splicing GalleryENSG00000232991
Gene ExpressionGACAT1 [ NCBI-GEO ]   GACAT1 [ EBI - ARRAY_EXPRESS ]   GACAT1 [ SEEK ]   GACAT1 [ MEM ]
Gene Expression Viewer (FireBrowse)GACAT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)104326057
GTEX Portal (Tissue expression)GACAT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GACAT1
DMDM Disease mutations104326057
Blocks (Seattle)GACAT1
Human Protein AtlasENSG00000232991
Protein Interaction databases
FunCoupENSG00000232991
BioGRIDGACAT1
STRING (EMBL)GACAT1
ZODIACGACAT1
Ontologies - Pathways
Huge Navigator GACAT1 [HugePedia]
snp3D : Map Gene to Disease104326057
BioCentury BCIQGACAT1
ClinGenGACAT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD104326057
Clinical trialGACAT1
Miscellaneous
canSAR (ICR)GACAT1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGACAT1
EVEXGACAT1
GoPubMedGACAT1
iHOPGACAT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:06:55 CET 2017

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