Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GACAT2 (gastric cancer associated transcript 2 (non-protein coding))

Identity

Alias_namesMTCL1-AS1
MTCL1 antisense RNA 1
Alias_symbol (synonym)HMlincRNA717
Other aliasMTCL1AS1
HGNC (Hugo) GACAT2
LocusID (NCBI) 100287082
Atlas_Id 54035
Location 18p11.22  [Link to chromosome band 18p11]
Location_base_pair Starts at 8695854 and ends at 8707619 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GACAT2   50516
Cards
Entrez_Gene (NCBI)GACAT2  100287082  gastric cancer associated transcript 2 (non-protein coding)
AliasesMTCL1-AS1; MTCL1AS1
GeneCards (Weizmann)GACAT2
Ensembl hg19 (Hinxton)ENSG00000265962 [Gene_View]  chr18:8695854-8707619 [Contig_View]  GACAT2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000265962 [Gene_View]  chr18:8695854-8707619 [Contig_View]  GACAT2 [Vega]
ICGC DataPortalENSG00000265962
TCGA cBioPortalGACAT2
AceView (NCBI)GACAT2
Genatlas (Paris)GACAT2
WikiGenes100287082
SOURCE (Princeton)GACAT2
Genetics Home Reference (NIH)GACAT2
Genomic and cartography
GoldenPath hg19 (UCSC)GACAT2  -     chr18:8695854-8707619 -  18p11.22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GACAT2  -     18p11.22   [Description]    (hg38-Dec_2013)
EnsemblGACAT2 - 18p11.22 [CytoView hg19]  GACAT2 - 18p11.22 [CytoView hg38]
Mapping of homologs : NCBIGACAT2 [Mapview hg19]  GACAT2 [Mapview hg38]
OMIM616131   
Gene and transcription
Genbank (Entrez)BM717007 BQ026945 HG509729
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_010859 NW_004929409
Consensus coding sequences : CCDS (NCBI)GACAT2
Cluster EST : UnigeneHs.439434 [ NCBI ]
CGAP (NCI)Hs.439434
Alternative Splicing GalleryENSG00000265962
Gene ExpressionGACAT2 [ NCBI-GEO ]   GACAT2 [ EBI - ARRAY_EXPRESS ]   GACAT2 [ SEEK ]   GACAT2 [ MEM ]
Gene Expression Viewer (FireBrowse)GACAT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100287082
GTEX Portal (Tissue expression)GACAT2
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GACAT2
DMDM Disease mutations100287082
Blocks (Seattle)GACAT2
Human Protein AtlasENSG00000265962
Protein Interaction databases
FunCoupENSG00000265962
BioGRIDGACAT2
STRING (EMBL)GACAT2
ZODIACGACAT2
Ontologies - Pathways
Huge Navigator GACAT2 [HugePedia]
snp3D : Map Gene to Disease100287082
BioCentury BCIQGACAT2
ClinGenGACAT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100287082
Clinical trialGACAT2
Miscellaneous
canSAR (ICR)GACAT2 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGACAT2
EVEXGACAT2
GoPubMedGACAT2
iHOPGACAT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 13:06:55 CET 2017

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