Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GACAT3 (gastric cancer associated transcript 3 (non-protein coding))

Identity

Alias_namesLINC01458
long intergenic non-protein coding RNA 1458
Alias_symbol (synonym)lncRNA-AC130710
Other alias
HGNC (Hugo) GACAT3
LocusID (NCBI) 104797537
Atlas_Id 55006
Location 2p24.3  [Link to chromosome band 2p24]
Location_base_pair Starts at 16050427 and ends at 16085689 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GACAT3   50847
Cards
Entrez_Gene (NCBI)GACAT3  104797537  gastric cancer associated transcript 3 (non-protein coding)
AliasesLINC01458; lncRNA-AC130710
GeneCards (Weizmann)GACAT3
Ensembl hg19 (Hinxton)ENSG00000236289 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236289 [Gene_View]  chr2:16050427-16085689 [Contig_View]  GACAT3 [Vega]
ICGC DataPortalENSG00000236289
TCGA cBioPortalGACAT3
AceView (NCBI)GACAT3
Genatlas (Paris)GACAT3
WikiGenes104797537
SOURCE (Princeton)GACAT3
Genetics Home Reference (NIH)GACAT3
Genomic and cartography
GoldenPath hg38 (UCSC)GACAT3  -     chr2:16050427-16085689 +  2p24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GACAT3  -     2p24.3   [Description]    (hg19-Feb_2009)
EnsemblGACAT3 - 2p24.3 [CytoView hg19]  GACAT3 - 2p24.3 [CytoView hg38]
Mapping of homologs : NCBIGACAT3 [Mapview hg19]  GACAT3 [Mapview hg38]
OMIM616132   
Gene and transcription
Genbank (Entrez)BX107472 BX375330
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GACAT3
Cluster EST : UnigeneHs.435748 [ NCBI ]
CGAP (NCI)Hs.435748
Alternative Splicing GalleryENSG00000236289
Gene ExpressionGACAT3 [ NCBI-GEO ]   GACAT3 [ EBI - ARRAY_EXPRESS ]   GACAT3 [ SEEK ]   GACAT3 [ MEM ]
Gene Expression Viewer (FireBrowse)GACAT3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)104797537
GTEX Portal (Tissue expression)GACAT3
Human Protein AtlasENSG00000236289-GACAT3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GACAT3
DMDM Disease mutations104797537
Blocks (Seattle)GACAT3
Human Protein Atlas [tissue]ENSG00000236289-GACAT3 [tissue]
Protein Interaction databases
FunCoupENSG00000236289
BioGRIDGACAT3
STRING (EMBL)GACAT3
ZODIACGACAT3
Ontologies - Pathways
Huge Navigator GACAT3 [HugePedia]
snp3D : Map Gene to Disease104797537
BioCentury BCIQGACAT3
ClinGenGACAT3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD104797537
Clinical trialGACAT3
Miscellaneous
canSAR (ICR)GACAT3 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGACAT3
EVEXGACAT3
GoPubMedGACAT3
iHOPGACAT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:37:34 CET 2017

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